Description Usage Arguments Value See Also
Counts all non-overlapping instances of k-mers in a given set of sequences.
1 | count_homopolymer_corrected_kmers(sequences, k, kmers, is_rna = FALSE)
|
sequences |
character vector of DNA or RNA sequences |
k |
length of k-mer, either |
kmers |
column sums of return value of
|
is_rna |
if |
Returns a named numeric vector, where the elements are k-mer counts and the names are k-mers.
Other k-mer functions:
calculate_kmer_enrichment()
,
check_kmers()
,
compute_kmer_enrichment()
,
draw_volcano_plot()
,
estimate_significance_core()
,
estimate_significance()
,
generate_kmers()
,
generate_permuted_enrichments()
,
run_kmer_spma()
,
run_kmer_tsma()
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