get_ppm: Get Position Probability Matrix (PPM) from motif object
In transite: RNA-binding protein motif analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Return the position probability matrix of the specified motif.
Usage
1
get_ppm(motif)
Arguments
motif
object of class RBPMotif
Value
The position probability matrix of the specified motif
See Also
Other motif functions:
generate_iupac_by_kmers(),
generate_iupac_by_matrix(),
generate_kmers_from_iupac(),
get_motif_by_id(),
get_motif_by_rbp(),
get_motifs_meta_info(),
get_motifs(),
init_iupac_lookup_table(),
set_motifs()
Examples
1
get_ppm(get_motif_by_id("M178_0.6")[[1]])
transite documentation built on Nov. 8, 2020, 5:27 p.m.
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Description Usage Arguments Value See Also Examples
Description
Return the position probability matrix of the specified motif.
Usage
1 | get_ppm(motif)
|
Arguments
motif |
object of class |
Value
The position probability matrix of the specified motif
See Also
Other motif functions:
generate_iupac_by_kmers(),
generate_iupac_by_matrix(),
generate_kmers_from_iupac(),
get_motif_by_id(),
get_motif_by_rbp(),
get_motifs_meta_info(),
get_motifs(),
init_iupac_lookup_table(),
set_motifs()
Examples
1 | get_ppm(get_motif_by_id("M178_0.6")[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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