Description Usage Arguments Details Value References See Also Examples
Generates all possible k-mers for a given IUPAC string.
1 | generate_kmers_from_iupac(iupac, k)
|
iupac |
IUPAC string |
k |
length of k-mer, |
IUPAC RNA nucleotide code:
A | Adenine |
C | Cytosine |
G | Guanine |
U | Uracil |
R | A or G |
Y | C or U |
S | G or C |
W | A or U |
K | G or U |
M | A or C |
B | C or G or U |
D | A or G or U |
H | A or C or U |
V | A or C or G |
N | any base |
list of k-mers
http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html
Other motif functions:
generate_iupac_by_kmers()
,
generate_iupac_by_matrix()
,
get_motif_by_id()
,
get_motif_by_rbp()
,
get_motifs_meta_info()
,
get_motifs()
,
get_ppm()
,
init_iupac_lookup_table()
,
set_motifs()
1 | generate_kmers_from_iupac(get_iupac(get_motif_by_id("M178_0.6")[[1]]), k = 6)
|
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