ge: Toy Gene Expression Data Set

In transite: RNA-binding protein motif analysis

Description

This object contains a toy data set based on gene expression measurements and 3'-UTR sequences of 1000 genes. It comprises three data frames with RefSeq identifiers, log fold change values, and 3'-UTR sequences of genes, which are either upregulated or downregulated after some hypothetical treatment, as well as all measured genes. The actual values are not important. This data set merely serves as an example input for various functions.

Usage

data(ge)

Format

A list with the following components:

foreground1_df	data frame that contains down-regulated genes after treatment
foreground2_df	data frame that contains up-regulated genes after treatment
background_df	data frame that contains all genes measured

transite documentation built on Nov. 8, 2020, 5:27 p.m.