Files in xps
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

configure.in

.BBSoptions

configure

NEWS

findvc.pl

NAMESPACE

DESCRIPTION

INSTALL

configure.win

README

ACKNOWLEDGMENT

configure.vc10.win

findroot.pl

build/vignette.rds

src/TMLMath.cxx

src/XPSProjectHandler.cxx

src/StatUtils.h

src/XPSDataTypes.h

src/RconfigR.h

src/XPSHybridizer.cxx

src/XPSAnalyzer.h

src/XPSUtils.cxx

src/RdpqR.h

src/XPSSchemes.cxx

src/XPSSelector.h

src/XPSData.h

src/XPSNormalizer.h

src/TStat.cxx

src/XPSBase.cxx

src/TMLMath.h

src/XPSPreProcessing.cxx

src/StatUtilsLinkDef.h

src/XPSSelector.cxx

src/StatUtils.cxx

src/Makefile.winMD

src/Makefile.winMT

src/XPSFilter.cxx

src/rwrapper.h

src/TStat.h

src/Makefile.win32

src/xpsLinkDef.h

src/XPSProcessing.h

src/XPSProjectHandler.h

src/rwrapper.cxx

src/Makefile.win

src/XPSBase.h

src/XPSUtils.h

src/XPSDataTypes.cxx

src/XPSAnalysis.h

src/XPSNormalizer.cxx

src/XPSAnalyzer.cxx

src/Makefile.arch

src/Makefile

src/xps.def

src/RmathR.h

src/XPSData.cxx

src/XPSHybridizer.h

src/XPSNormation.h

src/XPSSchemes.h

src/Makefile.winVC9

src/XPSProcessing.cxx

src/XPSAnalysis.cxx

src/RnmathR.h

src/XPSNormation.cxx

src/Makefile.vc10.win

src/XPSPreProcessing.h

src/XPSFilter.h

R/qualify.R R/farms.R R/firma.R R/trma.R R/methods.FilterTreeSet.R R/methods.QualTreeSet.R R/bgcorrect.R R/TreeSetClasses.R R/export.R R/utils.R R/normalize.R R/dabg.call.R R/methods.PreFilter.R R/import.R R/dfw.R R/methods.DataTreeSet.R R/Constructors.R R/rma.R R/mas5.call.R R/plot.R R/AffyRNAdeg.R R/methods.ExprTreeSet.R R/mas5.R R/methods.Filter.R R/fitQC.R R/zzz.R R/filter.R R/methods.CallTreeSet.R R/methods.ProcesSet.R R/express.R R/methods.ProjectInfo.R R/methods.AnalysisTreeSet.R R/methods.TreeSet.R R/root.graphics.R R/root.files.R R/methods.UniFilter.R R/ini.call.R R/mas4.R R/summarize.R R/xpsQAReport.R R/methods.SchemeTreeSet.R

vignettes/DensityPlotRMA.png

vignettes/HuGeneDiff_XPS_APT_DABG_pval_tc_r4.png

vignettes/U133P2_XPS_APT_EC_AFFY_MAS5_MvA_3x2.png

vignettes/BoxPlot_NrmExpMean.png

vignettes/HuGene_XPS_APT_MedPol_MvA.png

vignettes/Histogram3DRMA.png

vignettes/Image_BgrdMAS5_8x8_bgrd4.png

vignettes/HuGene_XPS_APT_RMA_MvA.png

vignettes/HuExon_XPS_APT_MedPol_MvA_ps.png

vignettes/BoxPlot_DataU133P2.png

vignettes/DensityPlot_BgrdRMA.png

vignettes/HuGene_XPS_APT_RMA_bg99qu99_MvA_tc_r4.png

vignettes/BoxPlot_BgrdMAS5_bgrd.png

vignettes/XPS_U133P2_Gene_Exon_mean_dot.png

vignettes/XPS_APT_HuGene_PValue.png

vignettes/Image_BgrdGC_bgrd4.png

vignettes/ScatterPlot_ExprMedpol_BrAPrA.png

vignettes/DensityPlot_ExprMedpol.png

vignettes/U133P2_APT_RMA_RMAsketch_MvA.png

vignettes/U133P2_APT_RMA_MvA.png

vignettes/HuExon_XPS_APT_RMA_MvA_tc.png

vignettes/xpsClasses.Rnw

vignettes/U133P2_APT_PLIER_MvA.png

vignettes/BoxPlot_BgrdGC_bgrd.png

vignettes/HuGene_XPS_APT_RMA_MvA_ps_r4.png

vignettes/HuExon_Diff_XPS_APT_DABG_pval_ps.png

vignettes/Image_BgrdRMA_data4.png

vignettes/ScatterPlot_ExprDFW_BrAPrA.png

vignettes/Image_BgrdMAS5_bgrd4.png

vignettes/xps.Rnw

vignettes/HuGene_Diff_XPS_DABG_MAS5_pval.png

vignettes/Image_BgrdRMA_bgrd4.png

vignettes/DensityPlot_BgrdGC_pm.png

vignettes/DensityPlot.png

vignettes/DensityPlot_ExprFARMS.png

vignettes/XPS_U133P2_HuGene_HuExon_logFC.png

vignettes/HuExon_XPS_APT_RMA_MvA.png

vignettes/DensityPlot_BgrdMAS5_both.png

vignettes/ScatterPlot_NormQuant_PM_BrABrB.png

vignettes/HuExon_XPS_APT_MedPol_MvA.png

vignettes/U133P2_XPS_APT_RMA_MvA.png

vignettes/BoxPlot_ExprMedpol.png

vignettes/Corrplot_legend.png

vignettes/xps.bib

vignettes/Histogram3Drotated.png

vignettes/BoxPlot_ExprFARMS.png

vignettes/ScatterPlot_ExprFARMS_BrABrB.png

vignettes/HuExon_XPS_APT_RMA_bg103qu103_MvA_ps.png

vignettes/Image_BgrdMAS4_bgrd4.png

vignettes/Graph2DRMA.png

vignettes/HuExon_XPS_APT_RMA_MvA_ps.png

vignettes/DensityPlot_DataU133P2.png

vignettes/ScatterPlot_ExprMedpol_BrABrB.png

vignettes/HuGene_XPS_APT_RMA_MvA_tc_r4.png

vignettes/U133P2_XPS_AFFY_EC_APT_MAS5_pval.png

vignettes/xpsPreprocess.Rnw

vignettes/DensityPlot_NormQuant.png

vignettes/DensityPlot_ExprTukey.png

vignettes/BoxPlot_NormSup_BgrdMAS.png

vignettes/DensityPlot_ExprDFW.png

vignettes/Histogram2DRMA.png

vignettes/BoxPlot_NormQuant.png

vignettes/MvAPlot.png

vignettes/HuExon_XPS_APT_MedPol_MvA_tc.png

vignettes/BoxPlot_BgrdRMA_data.png

vignettes/ScatterPlot_ExprDFW_BrABrB.png

vignettes/Histogram3D.png

vignettes/Histogram3DRMArotated.png

vignettes/U133P2_Diff_XPS_AFFY_MAS5_pval.png

vignettes/HuExon_XPS_APT_RMA_bg103qu103_MvA_tc.png

vignettes/BoxPlot_ExprTukey.png

vignettes/HuGene_XPS_APT_MedPol_MvA_tc_r4.png

vignettes/ScatterPlot_ExprTukey_BrABrB.png

vignettes/Image_BgrdMAS8x8x_bgrd4.png

vignettes/HuGene_XPS_APT_RMA_bg99qu99_MvA_ps_r4.png

vignettes/ScatterPlot_ExprFARMS_BrAPrA.png

vignettes/DensityPlot_NrmExpMean.png

vignettes/ScatterPlot_NormQuant_PM_BrAPrA.png

vignettes/Image.png

vignettes/DensityPlot_NormSup_BgrdMAS.png

vignettes/HuGene_Diff_XPS_APT_DABG_pval.png

vignettes/U133P2_APT_PLIER_Scatter.png

vignettes/MADplot_legend.png

vignettes/BoxPlot_BgrdRMA.png

vignettes/Histogram2DRMAsurf2.png

vignettes/U133P2_XPS_AFFY_APT_RMA.png

vignettes/XPS_APT_HuExon_AdjPValue.png

vignettes/Graph2D.png

vignettes/BoxPlot_ExprDFW.png

vignettes/APTvsXPS.Rnw

vignettes/BoxPlot_BgrdRMA_bgrd.png

vignettes/ProfileExonRMA.png

vignettes/ImageZoom.png

vignettes/ScatterPlot_ExprTukey_BrAPrA.png

inst/CHANGELOG

inst/INSTALL

inst/README

inst/ACKNOWLEDGMENT

inst/doc/xps.pdf

inst/doc/xpsClasses.Rnw

inst/doc/xps.Rnw

inst/doc/xpsClasses.R inst/doc/xps.R inst/doc/APTvsXPS.R

inst/doc/xpsPreprocess.Rnw

inst/doc/APTvsXPS.pdf inst/doc/xpsClasses.pdf inst/doc/xpsPreprocess.pdf inst/doc/xpsPreprocess.R

inst/doc/APTvsXPS.Rnw

inst/QC/QC.expr.Rnw

inst/QC/QC.break.Rnw

inst/QC/QC.pseudo.fig.Rnw

inst/QC/QC.pseudo.txt.Rnw

inst/QC/QC.data.Rnw

inst/QC/QC.qual.Rnw

inst/QC/QC.call.Rnw

inst/QC/QC.begin.Rnw

inst/QC/QC.end.Rnw

inst/schemes/SchemeTest3.root

inst/raw/TestB1.CEL

inst/raw/TestA2.CEL

inst/raw/TestB2.CEL

inst/raw/TestA1.CEL

inst/rootsrc/macroDrawLeaves.C

inst/rootsrc/macroDrawImage.C

inst/rootsrc/macroOpenBrowser.C

inst/rootsrc/macroDrawProfilePlot.C

inst/rootsrc/macroDraw.C

inst/rootsrc/macroDrawDensity.C

inst/examples/script4bestmatch.R inst/examples/script4xpsPreprocess.R inst/examples/script4schemes.R

inst/examples/macro4XPS.C

inst/examples/script4xps.R inst/examples/updateAnnotation.R inst/examples/script4xps2apt.R inst/examples/script4exon.R

inst/rootdata/tmp_Test3RMA.root

inst/rootdata/DataTest3_cel.root

xps documentation built on Nov. 8, 2020, 6 p.m.

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xps
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Files in xps
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

R Package Documentation

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xps Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Files in xps Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

R Package Documentation

Browse R Packages

We want your feedback!

xps
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Files in xps
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays