Biocview "GenePrediction"

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

A Framework for visualizing gene set enrichment throughout neurodevelopment

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Associates DNA Methylation with Matched gene Expression

BASiNET - Classification of mRNA and lncRNA sequences using complex network theory

Better prediction by use of co-data: Adaptive group-regularized ridge regression

Binomial Random Forest Feature Selection

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Classification of RNA Sequences using Complex Network and Information Theory

Classification of RNA Sequences using Complex Network Theory

Codon Usage Analysis and Prediction of Gene Expressivity

CoRegFlux

Extending guilt by association by degree

Functional Annotation of Custom Transcriptomes

GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Genetic inteRaction and EssenTiality neTwork mApper

Host-Pathogen Interaction Prediction

Identification of candidate genes associated with genetic variation

Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

In-silico methods for genetic finemapping in inbred mice

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

Omics Data Integration Project

Pancreatic Ductal Adenocarcinoma Tool-Kit

PhenoGeneRanker: A gene and phenotype prioritization tool

Predicting Targets for Drosophila Intragenic miRNAs

Predict MicroExons in Plant Genomes

Random walk with restart on multiplex and heterogeneous Networks

sigFeature: Significant feature selection using SVM-RFE & t-statistic

Time-Course Multi-Omics data integration

TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes

Tools for curating, analyzing, and manipulating biological sequences