Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.
|Author||Olena Ohlei <[email protected]>|
|Maintainer||Olena Ohlei <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on CRAN|
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