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Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.
Package details |
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Author | Olena Ohlei <olena.ohlei@student.uni-luebeck.de> |
Maintainer | Olena Ohlei <olena.ohlei@student.uni-luebeck.de> |
License | GPL (>= 2) |
Version | 0.3.4 |
URL | https://www.r-project.org |
Package repository | View on CRAN |
Installation |
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