germlineReconstr: Function to reconstruction of germline sequencies based on...

In BCellMA: B Cell Receptor Somatic Hyper Mutation Analysis

Description

Function to reconstruction of germline sequencies based on IMGT outputs.

Usage

germlineReconstr(data_tab2, data_tab7)

Arguments

data_tab2	Column V_Region in the IMGT table 2
data_tab7	Column V_Region in the IMGT table 7

Value

output is a vector of germline sequencies.

References

Brochet X., Lefranc MP., and Giudicelli V. IMGT/V-QUEST: the highly customized andintegrated system for IG and TR standardized V-Jand V-D-J sequence analysis.NucleicAcids Res., 36(Web Server issue):W503 - W508, 2008. doi: 10.1093/nar/gkn316

Examples

data(IMGTtab2)
data(IMGTtab7)
germline<-germlineReconstr(IMGTtab2$V_REGION, IMGTtab7$V_REGION)
germline

BCellMA documentation built on May 1, 2019, 7:58 p.m.