gene_comb_plot: Plot of gene/gene ratios of two gene families

In BCellMA: B Cell Receptor Somatic Hyper Mutation Analysis

Description

Gene/gene ratios of two gene families can be plotted as an gene_comb_plot().

Usage

gene_comb_plot(data, text, legend_position, a, b)

Arguments

data	Results from the function gene_comb_funk().
text	The legend of the plot.
legend_position	The position of the legend. It can be "none","left", "right", "bottom", "top".
a	The angle of X-axis legend.
b	The distance from X-axis to legend.

Value

Output is the plot of gene/gene ratios of two gene families.

References

Bischof J. and Ibrahim SM. bcRep: R Package for Comprehensive Analysis of B Cell Receptor Repertoire Data. PLoS One. 11(8):e0161569, 2016. doi: 10.1371/journal.pone.0161569.

Examples

data(IMGTtab1)
gane_comb<-gene_comb_funk(family1 = IMGTtab1$V_GENE_and_allele,
                          family2 = IMGTtab1$J_GENE_and_allele)
gene_comb_plot(gane_comb, "Plot of IGHV and IGHJ ratio", legend_position = "right", a = 35, b = 0.5)

BCellMA documentation built on May 1, 2019, 7:58 p.m.