IMGTtab2: IMGT Table 2

In BCellMA: B Cell Receptor Somatic Hyper Mutation Analysis

Description

Data from the Excel file 2 are named IMGT-gapped-nt-sequences and are included in IMGTtab2

Usage

data(IMGTtab2)

Format

A data frame with 9 rows and 18 variables

Details

• Sequence_number. number of Sequence

• Sequence_ID. ID frome gene bank

• Functionality. productive/unproductive

• V_GENE_and_allele. germline genes of V Region

• J_GENE_and_allele. germline genes of J Region

• D_GENE_and_allele. germline genes of D Region

• V_D_J_REGION. nucleotides in VDJ region in mutated sequence

• V_J_REGION. NA

• V_REGION. nucleotides in V region in mutated sequence

• FR1_IMGT. nucleotides in FR1 in mutated sequence

• CDR1_IMGT. nucleotides in CDR1 in mutated sequence

• FR2_IMGT. nucleotides in FR2 in mutated sequence

• CDR2_IMGT. nucleotides in CDR2 in mutated sequence

• FR3_IMGT. nucleotides in FR3 in mutated sequence

• CDR3_IMGT. nucleotides in CDR3 in mutated sequence

• JUNCTION. nucleotides in JUNCTION region in mutated sequence

• J_REGION. nucleotides in J region in mutated sequence

• FR4_IMGT. nucleotides in FR4 in mutated sequence

BCellMA documentation built on May 1, 2019, 7:58 p.m.