aa_dist: Average frequency of nucleotide mutations resulting in amino...

Description Usage Arguments Value References Examples

View source: R/aa_dist.R

Description

Calculate average frequency of nucleotide mutations resulting in amino acid substitution in CDRs and/or in FRs.

Usage

1

Arguments

data

CDRs and FRs colums from IMGT/HighV-Quest table 7 coled "7_V-REGION-mutation-and-AA-change-table.txt"

Value

Output is the data matrix of average mutation frequency of nucleotide mutations resulting in amino acid substitution.

References

Zuckerman NS., Hazanov H., Barak M., Edelman H., Hess S., Shcolnik H., Dunn-Walters D.,and Mehr R. Somatic hypermutation and antigen-driven selection of B cells are altered inautoimmune diseases.J Autoimmun, 35(4):325 - 335, 2010. doi: 10.1016/j.jaut.2010.07.004.

Examples

1
2
3
data(IMGTtab7)
Regions<-cbind(IMGTtab7$FR1_IMGT,IMGTtab7$CDR1_IMGT, IMGTtab7$FR2_IMGT)
Regions_matrix<-aa_dist(data=Regions)

BCellMA documentation built on May 1, 2019, 7:58 p.m.