GLSconvert: Genotype List String Conversion

In BIGDAWG: Case-Control Analysis of Multi-Allelic Loci

Description

Main Workhorse wrapper for cross converting columnar table to GL string representaion.

Usage

GLSconvert(
  Data,
  Convert,
  File.Output = "txt",
  System = "HLA",
  HZY.Red = FALSE,
  DRB345.Check = FALSE,
  Strip.Prefix = TRUE,
  Abs.Fill = FALSE,
  Cores.Lim = 1L
)

Arguments

Data	String File name or R Data Frame.
Convert	String Direction for conversion.
File.Output	String Type of File.Output.
System	String Genetic system (HLA or KIR) of the data being converted
HZY.Red	Logical Reduction of homozygote genotypes to single allele.
DRB345.Check	Logical Check DR haplotypes for consistency and flag unusual haplotypes.
Strip.Prefix	Logical Should System/Locus prefixes be stripped from table data.
Abs.Fill	Logical Should absent loci special designations be used.
Cores.Lim	Integer How many cores can be used.

BIGDAWG documentation built on Nov. 17, 2021, 5:08 p.m.