Update function for protein aligment upon new IMGT HLA data release

Description

This updates the protein aligment used in checking HLA loci and alleles as well as in the amino acid analysis. Alignment must exist in database (ftp://ftp.ebi.ac.uk/pub/databases/ipd/imgt/hla/alignments/) or update will fail.

Usage

1
UpdateRelease(Add.Loci = NULL, Force = F, Restore = F, Output = F)

Arguments

Add.Loci

Character string or vector of loci that should be added to default loci (default = HLA-A,B,C,DRB1/3/4/5,DQA1,DQB1,DPA1,DPB1).

Force

Logical specifiying if update should be forced.

Restore

Logical specifying if the original alignment file be restored.

Output

Logical indicating if error reporting should be written to file.

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