Boom: Bayesian Object Oriented Modeling

Share:

A C++ library for Bayesian modeling, with an emphasis on Markov chain Monte Carlo. Although boom contains a few R utilities (mainly plotting functions), its primary purpose is to install the BOOM C++ library on your system so that other packages can link against it.

Author
Steven L. Scott is the sole author and creator of the BOOM project. Some code in the BOOM libraries has been modified from other open source projects. These include Cephes (obtained from Netlib, written by Stephen L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a modified version of the R math libraries (R core development team). Original copyright notices have been maintained in all source files. In these cases, copyright claimed by Steven L. Scott is limited to modifications made to the original code.
Date of publication
2016-08-18 09:48:03
Maintainer
Steve Scott <stevescott@google.com>
License
LGPL-2.1 | file LICENSE
Version
0.5

View on CRAN

Man pages

add.segments
Function to add horizontal line segments to an existing plot
ar1.coefficient.prior
Normal prior for an AR1 coefficient
beta.prior
Beta prior for a binomial proportion
boxplot.mcmc.matrix
Plot the distribution of a matrix
boxplot.true
side-by-side boxplots from a matrix, with optional reference...
check.data
Checking data formats
compare.den
Compare several density estimates.
compare.many.densities
Compare several density estimates.
compare.many.ts
Compares several density estimates.
compare.vector.distributions
Boxplots to compare distributions of vectors
dirichlet.prior
Dirichlet prior for a multinomial distribution
discrete-uniform-prior
Discrete prior distributions
double.model
Prior distributions for a real valued scalar
external.legend
Add an external legend to an array of plots.
gamma.prior
Gamma prior distribution
generate_factor_data
Generate a data frame of all factor data
histabunch
A Bunch of Histograms
is.even
Check whether a number is even or odd.
lognormal.prior
Lognormal Prior Distribution
markov.prior
Prior for a Markov chain
match_data_frame
MatchDataFrame
mvn.diagonal.prior
diagonal MVN prior
mvn.independent.sigma.prior
Independence prior for the MVN
mvn.prior
Multivariate normal prior
normal.inverse.gamma.prior
Normal inverse gamma prior
normal.inverse.wishart.prior
Normal inverse Wishart prior
normal.prior
Normal (scalar Gaussian) prior distribution
pairs.density
Pairs plot for posterior distributions.
plot.density.contours
Contour plot of a bivariate density.
plot.dynamic.distribution
Plots the pointwise evolution of a distribution over an index...
plot.macf
Plots individual autocorrelation functions for many-valued...
plot.many.ts
Multiple time series plots
sd.prior
Prior for a standard deviation or variance
suggest.burn.log.likelihood
Suggest MCMC Burn-in from Log Likelihood
thin
Thin the rows of a matrix
uniform.prior
Uniform prior distribution

Files in this package

Boom
Boom/inst
Boom/inst/include
Boom/inst/include/Samplers
Boom/inst/include/Samplers/UnivariateSliceSampler.hpp
Boom/inst/include/Samplers/ScalarLangevinSampler.hpp
Boom/inst/include/Samplers/ImportanceResampler.hpp
Boom/inst/include/Samplers/Sampler.hpp
Boom/inst/include/Samplers/UnivariateLangevinSampler.hpp
Boom/inst/include/Samplers/MoveAccounting.hpp
Boom/inst/include/Samplers/RejectionSampler.hpp
Boom/inst/include/Samplers/ScalarSliceSampler.hpp
Boom/inst/include/Samplers/ARMS.hpp
Boom/inst/include/Samplers/DirectProposal.hpp
Boom/inst/include/Samplers/SliceSampler.hpp
Boom/inst/include/Samplers/MetropolisHastings.hpp
Boom/inst/include/Samplers/TIM.hpp
Boom/inst/include/Samplers/MH_Proposals.hpp
Boom/inst/include/Samplers/ScalarAdaptiveRejectionSampler.hpp
Boom/inst/include/Samplers/Gilks
Boom/inst/include/Samplers/Gilks/arms.hpp
Boom/inst/include/distributions
Boom/inst/include/distributions/inverse_gaussian.hpp
Boom/inst/include/distributions/DoublyBoundedAdaptiveRejectionSampler.hpp
Boom/inst/include/distributions/trun_logit.hpp
Boom/inst/include/distributions/rng.hpp
Boom/inst/include/distributions/BinomialDistribution.hpp
Boom/inst/include/distributions/BoundedAdaptiveRejectionSampler.hpp
Boom/inst/include/distributions/Rmath_dist.hpp
Boom/inst/include/distributions/trun_gamma.hpp
Boom/inst/include/distributions/Markov.hpp
Boom/inst/include/distributions/ks.hpp
Boom/inst/include/LinAlg
Boom/inst/include/LinAlg/QR.hpp
Boom/inst/include/LinAlg/Kronecker.hpp
Boom/inst/include/LinAlg/Givens.hpp
Boom/inst/include/LinAlg/Array3.hpp
Boom/inst/include/LinAlg/SWEEP.hpp
Boom/inst/include/LinAlg/VectorView.hpp
Boom/inst/include/LinAlg/Selector.hpp
Boom/inst/include/LinAlg/DiagonalMatrix.hpp
Boom/inst/include/LinAlg/CorrelationMatrix.hpp
Boom/inst/include/LinAlg/LU.hpp
Boom/inst/include/LinAlg/LinAlgExceptions.hpp
Boom/inst/include/LinAlg/MatrixPartition.hpp
Boom/inst/include/LinAlg/ArrayIterator.hpp
Boom/inst/include/LinAlg/Array.hpp
Boom/inst/include/LinAlg/VectorViewIterator.hpp
Boom/inst/include/LinAlg/Vector.hpp
Boom/inst/include/LinAlg/SVD.hpp
Boom/inst/include/LinAlg/SpdMatrix.hpp
Boom/inst/include/LinAlg/Eigen.hpp
Boom/inst/include/LinAlg/blas.hpp
Boom/inst/include/LinAlg/Cholesky.hpp
Boom/inst/include/LinAlg/Matrix.hpp
Boom/inst/include/LinAlg/stack_columns.hpp
Boom/inst/include/LinAlg/SubMatrix.hpp
Boom/inst/include/cpputil
Boom/inst/include/cpputil/ordering.hpp
Boom/inst/include/cpputil/ParamHolder.hpp
Boom/inst/include/cpputil/random_element.hpp
Boom/inst/include/cpputil/ask_to_continue.hpp
Boom/inst/include/cpputil/make_unique_preserve_order.hpp
Boom/inst/include/cpputil/str2d.hpp
Boom/inst/include/cpputil/date_utils.hpp
Boom/inst/include/cpputil/index_table.hpp
Boom/inst/include/cpputil/stream.hpp
Boom/inst/include/cpputil/ProgramOptions.hpp
Boom/inst/include/cpputil/level_iterator.hpp
Boom/inst/include/cpputil/permute.hpp
Boom/inst/include/cpputil/ParamFileIoManager.hpp
Boom/inst/include/cpputil/Ptr.hpp
Boom/inst/include/cpputil/OutputTable.hpp
Boom/inst/include/cpputil/Redirector.hpp
Boom/inst/include/cpputil/file_utils.hpp
Boom/inst/include/cpputil/lse.hpp
Boom/inst/include/cpputil/DateTime.hpp
Boom/inst/include/cpputil/math_utils.hpp
Boom/inst/include/cpputil/nyi.hpp
Boom/inst/include/cpputil/Date.hpp
Boom/inst/include/cpputil/compare_vector_bool.hpp
Boom/inst/include/cpputil/apply_permutation.hpp
Boom/inst/include/cpputil/scan.hpp
Boom/inst/include/cpputil/report_error.hpp
Boom/inst/include/cpputil/string_utils.hpp
Boom/inst/include/cpputil/seq.hpp
Boom/inst/include/cpputil/rep.hpp
Boom/inst/include/cpputil/DefaultVnames.hpp
Boom/inst/include/cpputil/print.hpp
Boom/inst/include/cpputil/Constants.hpp
Boom/inst/include/cpputil/ProgressTracker.hpp
Boom/inst/include/cpputil/unmap.hpp
Boom/inst/include/cpputil/portable_math.hpp
Boom/inst/include/cpputil/Split.hpp
Boom/inst/include/cpputil/parse_range.hpp
Boom/inst/include/cpputil/ThrowException.hpp
Boom/inst/include/cpputil/RefCounted.hpp
Boom/inst/include/cpputil/Polynomial.hpp
Boom/inst/include/cpputil/gll.hpp
Boom/inst/include/cpputil/LongString.hpp
Boom/inst/include/distributions.hpp
Boom/inst/include/TargetFun
Boom/inst/include/TargetFun/ScalarLogpostTF.hpp
Boom/inst/include/TargetFun/TargetFun.hpp
Boom/inst/include/TargetFun/LogPost.hpp
Boom/inst/include/TargetFun/JacobianChecker.hpp
Boom/inst/include/TargetFun/Loglike.hpp
Boom/inst/include/TargetFun/Transformation.hpp
Boom/inst/include/stats
Boom/inst/include/stats/Design.hpp
Boom/inst/include/stats/NaturalSpline.hpp
Boom/inst/include/stats/IQagent.hpp
Boom/inst/include/stats/ols.hpp
Boom/inst/include/stats/moments.hpp
Boom/inst/include/stats/logit.hpp
Boom/inst/include/stats/compare_binomial_proportions.hpp
Boom/inst/include/stats/diff.hpp
Boom/inst/include/stats/Resampler.hpp
Boom/inst/include/stats/regression.hpp
Boom/inst/include/stats/DataTable.hpp
Boom/inst/include/stats/Spline.hpp
Boom/inst/include/stats/ChiSquareTest.hpp
Boom/inst/include/stats/Bspline.hpp
Boom/inst/include/stats/ECDF.hpp
Boom/inst/include/stats/FreqDist.hpp
Boom/inst/include/stats/simple_random_sample.hpp
Boom/inst/include/stats/compare_predictions.hpp
Boom/inst/include/Models
Boom/inst/include/Models/BernoulliModel.hpp
Boom/inst/include/Models/WeightedData.hpp
Boom/inst/include/Models/ZeroInflatedPoissonModel.hpp
Boom/inst/include/Models/DoubleModel.hpp
Boom/inst/include/Models/Glm
Boom/inst/include/Models/Glm/Glm.hpp
Boom/inst/include/Models/Glm/MultinomialProbitModel.hpp
Boom/inst/include/Models/Glm/MvnGivenX.hpp
Boom/inst/include/Models/Glm/WeightedRegressionModel.hpp
Boom/inst/include/Models/Glm/MultinomialLogitModel.hpp
Boom/inst/include/Models/Glm/ZeroInflatedGammaRegression.hpp
Boom/inst/include/Models/Glm/ChoiceData.hpp
Boom/inst/include/Models/Glm/PoissonRegressionData.hpp
Boom/inst/include/Models/Glm/ZeroInflatedPoissonRegression.hpp
Boom/inst/include/Models/Glm/ZeroInflatedLognormalRegression.hpp
Boom/inst/include/Models/Glm/HierarchicalPoissonRegression.hpp
Boom/inst/include/Models/Glm/LogisticRegressionModel.hpp
Boom/inst/include/Models/Glm/MvnGivenXandSigma.hpp
Boom/inst/include/Models/Glm/TRegression.hpp
Boom/inst/include/Models/Glm/BinomialProbitModel.hpp
Boom/inst/include/Models/Glm/RegressionModel.hpp
Boom/inst/include/Models/Glm/MvtRegModel.hpp
Boom/inst/include/Models/Glm/PoissonRegressionModel.hpp
Boom/inst/include/Models/Glm/GlmCoefs.hpp
Boom/inst/include/Models/Glm/MvReg2.hpp
Boom/inst/include/Models/Glm/ProbitRegression.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers
Boom/inst/include/Models/Glm/PosteriorSamplers/TDataImputer.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonRegressionRwmSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/draw_logit_lambda.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/DAFE_MLM.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/ZeroInflatedLognormalRegressionPosteriorSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialProbitDataImputer.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MnpBetaGivenSigmaSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MlogitRwm.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MvtRegSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompleteDataSuf.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonDataImputer.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/ZeroInflatedGammaRegressionPosteriorSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitSamplerTim.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/TRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BregVsSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/AggregatedRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MLVS.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialProbitSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/ProbitSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/TRegressionSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitSamplerRwm.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/SpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitDataImputer.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/HierarchicalPoissonRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/ZeroInflatedPoissonRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/ProbitRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/SpikeSlabDaRegressionSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/NormalMixtureApproximation.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/CumulativeProbitSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MnpBetaSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/RegressionConjSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/LogitSamplerBma.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/PartRegSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialProbitTimSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/LogitSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/poisson_mixture_approximation_table.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MLAuxMixSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/CumulativeLogitSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/VsPriorSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/MvRegSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialProbitCompositeSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp
Boom/inst/include/Models/Glm/PosteriorSamplers/GammaRegressionPosteriorSampler.hpp
Boom/inst/include/Models/Glm/BinomialLogitModel.hpp
Boom/inst/include/Models/Glm/GammaRegressionModel.hpp
Boom/inst/include/Models/Glm/BinomialRegressionData.hpp
Boom/inst/include/Models/Glm/AggregatedRegressionModel.hpp
Boom/inst/include/Models/Glm/OrdinalCutpointModel.hpp
Boom/inst/include/Models/Glm/VariableSelectionPrior.hpp
Boom/inst/include/Models/Glm/CumulativeProbitModel.hpp
Boom/inst/include/Models/Glm/ModelSelectionConcepts.hpp
Boom/inst/include/Models/Glm/GlmMvnPriorBase.hpp
Boom/inst/include/Models/Glm/CumulativeLogitModel.hpp
Boom/inst/include/Models/MvnGivenSigma.hpp
Boom/inst/include/Models/ZeroMeanMvnModel.hpp
Boom/inst/include/Models/WishartModel.hpp
Boom/inst/include/Models/ExponentialModel.hpp
Boom/inst/include/Models/BinomialModel.hpp
Boom/inst/include/Models/MvnModel.hpp
Boom/inst/include/Models/ConstrainedVectorParams.hpp
Boom/inst/include/Models/MvtModel.hpp
Boom/inst/include/Models/MultinomialModel.hpp
Boom/inst/include/Models/IndependentMvnModelGivenScalarSigma.hpp
Boom/inst/include/Models/FiniteMixtureModel.hpp
Boom/inst/include/Models/ProductDirichletModel.hpp
Boom/inst/include/Models/SpdParams.hpp
Boom/inst/include/Models/Nonparametric
Boom/inst/include/Models/Nonparametric/BayesRules.hpp
Boom/inst/include/Models/Nonparametric/BayesRulesModel.hpp
Boom/inst/include/Models/Nonparametric/DataTableDataPolicy.hpp
Boom/inst/include/Models/Nonparametric/GaussianBayesRulesModel.hpp
Boom/inst/include/Models/Nonparametric/PosteriorSamplers
Boom/inst/include/Models/Nonparametric/PosteriorSamplers/ProposalDistributions.hpp
Boom/inst/include/Models/Nonparametric/PosteriorSamplers/GaussianBayesRulesPosteriorSampler.hpp
Boom/inst/include/Models/Nonparametric/PosteriorSamplers/BagOfRulesPrior.hpp
Boom/inst/include/Models/Nonparametric/PosteriorSamplers/BayesRulesPosteriorSampler.hpp
Boom/inst/include/Models/Mixtures
Boom/inst/include/Models/Mixtures/DirichletProcessMvnModel.hpp
Boom/inst/include/Models/Mixtures/ConditionalFiniteMixtureModel.hpp
Boom/inst/include/Models/Mixtures/PosteriorSamplers
Boom/inst/include/Models/Mixtures/PosteriorSamplers/DirichletProcessMvnCollapsedGibbsSampler.hpp
Boom/inst/include/Models/Mixtures/PosteriorSamplers/ConditionalFiniteMixtureSampler.hpp
Boom/inst/include/Models/Policies
Boom/inst/include/Models/Policies/IID_DataPolicy.hpp
Boom/inst/include/Models/Policies/ParamPolicy_2.hpp
Boom/inst/include/Models/Policies/PriorPolicy.hpp
Boom/inst/include/Models/Policies/ManyParamPolicy.hpp
Boom/inst/include/Models/Policies/DataInfoPolicy.hpp
Boom/inst/include/Models/Policies/CompositeParamPolicy.hpp
Boom/inst/include/Models/Policies/NullParamPolicy.hpp
Boom/inst/include/Models/Policies/ParamPolicy_1.hpp
Boom/inst/include/Models/Policies/NullDataPolicy.hpp
Boom/inst/include/Models/Policies/SufstatOnlyDataPolicy.hpp
Boom/inst/include/Models/Policies/ParamPolicy_4.hpp
Boom/inst/include/Models/Policies/SufstatDataPolicy.hpp
Boom/inst/include/Models/Policies/NonparametricParamPolicy.hpp
Boom/inst/include/Models/Policies/MixtureDataPolicy.hpp
Boom/inst/include/Models/Policies/ParamPolicy_3.hpp
Boom/inst/include/Models/PoissonModel.hpp
Boom/inst/include/Models/ParamTypes.hpp
Boom/inst/include/Models/CompositeModel.hpp
Boom/inst/include/Models/DataPair.hpp
Boom/inst/include/Models/LognormalModel.hpp
Boom/inst/include/Models/GaussianModelGivenSigma.hpp
Boom/inst/include/Models/HMM
Boom/inst/include/Models/HMM/hmm_tools.hpp
Boom/inst/include/Models/HMM/HmmFilter.hpp
Boom/inst/include/Models/HMM/Clickstream
Boom/inst/include/Models/HMM/Clickstream/NestedHmm.hpp
Boom/inst/include/Models/HMM/Clickstream/Session.hpp
Boom/inst/include/Models/HMM/Clickstream/PosteriorSamplers
Boom/inst/include/Models/HMM/Clickstream/PosteriorSamplers/NestedHmmPosteriorSampler.hpp
Boom/inst/include/Models/HMM/Clickstream/Stream.hpp
Boom/inst/include/Models/HMM/Clickstream/Event.hpp
Boom/inst/include/Models/HMM/HmmDataImputer.hpp
Boom/inst/include/Models/HMM/PosteriorSamplers
Boom/inst/include/Models/HMM/PosteriorSamplers/HmmPosteriorSampler.hpp
Boom/inst/include/Models/HMM/HealthStateModel.hpp
Boom/inst/include/Models/HMM/HMM2.hpp
Boom/inst/include/Models/MarginallyUniformCorrelationModel.hpp
Boom/inst/include/Models/MvnGivenScalarSigma.hpp
Boom/inst/include/Models/SpdModel.hpp
Boom/inst/include/Models/SufstatAbstractCombineImpl.hpp
Boom/inst/include/Models/MvnBase.hpp
Boom/inst/include/Models/ProductModel.hpp
Boom/inst/include/Models/UniformShrinkagePriorModel.hpp
Boom/inst/include/Models/DataTypes.hpp
Boom/inst/include/Models/SpdData.hpp
Boom/inst/include/Models/GaussianModelBase.hpp
Boom/inst/include/Models/ZeroInflatedLognormalModel.hpp
Boom/inst/include/Models/CompositeVectorModel.hpp
Boom/inst/include/Models/UniformCorrelationModel.hpp
Boom/inst/include/Models/Bart
Boom/inst/include/Models/Bart/GaussianBartModel.hpp
Boom/inst/include/Models/Bart/Bart.hpp
Boom/inst/include/Models/Bart/ResidualRegressionData.hpp
Boom/inst/include/Models/Bart/LogitBartModel.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers
Boom/inst/include/Models/Bart/PosteriorSamplers/BartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers/GaussianBartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers/ProbitBartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers/GaussianLinearBartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers/PoissonBartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/PosteriorSamplers/LogitBartPosteriorSampler.hpp
Boom/inst/include/Models/Bart/ProbitBartModel.hpp
Boom/inst/include/Models/Bart/GaussianLinearBartModel.hpp
Boom/inst/include/Models/Bart/PoissonBartModel.hpp
Boom/inst/include/Models/PosteriorSamplers
Boom/inst/include/Models/PosteriorSamplers/ExchangeableDirichletSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/FixedSpdSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MultinomialDirichletSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/PoissonGammaSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MvnVarSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/PosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ProductDirichletPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/FixedProbBinomialSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/PoissonGammaPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/SepStratSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MvnMeanSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroMeanGaussianConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/BetaBinomialPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/IndependentMvnVarSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ExponentialGammaSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroInflatedGammaPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MarkovConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/GaussianConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroInflatedPoissonSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/FiniteMixturePosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/BetaBinomialSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/CompositeModelSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroMeanMvnIndependenceSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/SharedSigsqSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/CorrelationSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/FixedUnivariateSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/DirichletPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/GaussianVarSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/CompositeSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/GaussianMeanSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/GammaPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MarkovConjShrinkageSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroInflatedLognormalPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/IndependentMvnConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/Imputer.hpp
Boom/inst/include/Models/PosteriorSamplers/MvnConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/MvnIndependentVarianceSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/ZeroMeanMvnConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/BetaPosteriorSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/AbsorbingMarkovConjSampler.hpp
Boom/inst/include/Models/PosteriorSamplers/GenericGaussianVarianceSampler.hpp
Boom/inst/include/Models/StateSpace
Boom/inst/include/Models/StateSpace/StateSpacePoissonModel.hpp
Boom/inst/include/Models/StateSpace/StateSpaceModelBase.hpp
Boom/inst/include/Models/StateSpace/StateSpaceNormalMixture.hpp
Boom/inst/include/Models/StateSpace/AggregatedStateSpaceRegression.hpp
Boom/inst/include/Models/StateSpace/StateSpaceStudentRegressionModel.hpp
Boom/inst/include/Models/StateSpace/StateSpaceRegressionModel.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StudentLocalLinearTrendPosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/SufstatManager.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/AggregatedStateSpacePosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StateSpacePoissonPosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StateSpaceRegressionSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/DynamicRegressionPosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StateSpacePosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StateSpaceStudentPosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/PosteriorSamplers/StateSpaceLogitPosteriorSampler.hpp
Boom/inst/include/Models/StateSpace/StateSpaceLogitModel.hpp
Boom/inst/include/Models/StateSpace/StateSpaceModel.hpp
Boom/inst/include/Models/StateSpace/Filters
Boom/inst/include/Models/StateSpace/Filters/SparseVector.hpp
Boom/inst/include/Models/StateSpace/Filters/SparseMatrix.hpp
Boom/inst/include/Models/StateSpace/Filters/ScalarKalmanStorage.hpp
Boom/inst/include/Models/StateSpace/Filters/SparseKalmanTools.hpp
Boom/inst/include/Models/StateSpace/Filters/KalmanTools.hpp
Boom/inst/include/Models/StateSpace/StateModels
Boom/inst/include/Models/StateSpace/StateModels/Holiday.hpp
Boom/inst/include/Models/StateSpace/StateModels/RandomWalkHolidayStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/StudentLocalLinearTrend.hpp
Boom/inst/include/Models/StateSpace/StateModels/ArStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/DynamicRegressionStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/RegressionStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/TrigStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/LocalLinearTrend.hpp
Boom/inst/include/Models/StateSpace/StateModels/SeasonalStateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/LocalLinearTrendMeanRevertingSlope.hpp
Boom/inst/include/Models/StateSpace/StateModels/StateModel.hpp
Boom/inst/include/Models/StateSpace/StateModels/LocalLevelStateModel.hpp
Boom/inst/include/Models/EmMixtureComponent.hpp
Boom/inst/include/Models/UniformModel.hpp
Boom/inst/include/Models/WeightedGaussianSuf.hpp
Boom/inst/include/Models/PointProcess
Boom/inst/include/Models/PointProcess/MarkovModulatedPoissonProcess.hpp
Boom/inst/include/Models/PointProcess/PoissonClusterProcess.hpp
Boom/inst/include/Models/PointProcess/PoissonProcess.hpp
Boom/inst/include/Models/PointProcess/HomogeneousPoissonProcess.hpp
Boom/inst/include/Models/PointProcess/BoundedPoissonProcessSimulator.hpp
Boom/inst/include/Models/PointProcess/PosteriorSamplers
Boom/inst/include/Models/PointProcess/PosteriorSamplers/WeeklyCyclePoissonProcessSampler.hpp
Boom/inst/include/Models/PointProcess/PosteriorSamplers/HomogeneousPoissonProcessPosteriorSampler.hpp
Boom/inst/include/Models/PointProcess/PosteriorSamplers/PoissonClusterPosteriorSampler.hpp
Boom/inst/include/Models/PointProcess/PosteriorSamplers/MarkovModulatedPoissonProcessPosteriorSampler.hpp
Boom/inst/include/Models/PointProcess/WeeklyCyclePoissonProcess.hpp
Boom/inst/include/Models/PointProcess/PointProcess.hpp
Boom/inst/include/Models/PointProcess/CosinePoissonProcess.hpp
Boom/inst/include/Models/ModelTypes.hpp
Boom/inst/include/Models/ZeroInflatedGammaModel.hpp
Boom/inst/include/Models/IndependentMvnModel.hpp
Boom/inst/include/Models/PoissonGammaModel.hpp
Boom/inst/include/Models/Sufstat.hpp
Boom/inst/include/Models/GaussianModel.hpp
Boom/inst/include/Models/BetaBinomialModel.hpp
Boom/inst/include/Models/TruncatedGammaModel.hpp
Boom/inst/include/Models/BetaModel.hpp
Boom/inst/include/Models/IRT
Boom/inst/include/Models/IRT/SubjectPrior.hpp
Boom/inst/include/Models/IRT/PcrNid.hpp
Boom/inst/include/Models/IRT/PartialCreditModel.hpp
Boom/inst/include/Models/IRT/SubjectSliceSampler.hpp
Boom/inst/include/Models/IRT/IRT.hpp
Boom/inst/include/Models/IRT/Subject.hpp
Boom/inst/include/Models/IRT/ItemDataPolicy.hpp
Boom/inst/include/Models/IRT/IrtModel.hpp
Boom/inst/include/Models/IRT/multisubscale_logit_cutpoint_model.hpp
Boom/inst/include/Models/IRT/Item.hpp
Boom/inst/include/Models/IRT/DafePcrRwm.hpp
Boom/inst/include/Models/IRT/DafePcr.hpp
Boom/inst/include/Models/IRT/ItemSliceSampler.hpp
Boom/inst/include/Models/IRT/Subject_prior.hpp
Boom/inst/include/Models/GammaModel.hpp
Boom/inst/include/Models/ChisqModel.hpp
Boom/inst/include/Models/WeightedMvnModel.hpp
Boom/inst/include/Models/ZeroMeanGaussianModel.hpp
Boom/inst/include/Models/Hierarchical
Boom/inst/include/Models/Hierarchical/HierarchicalZeroInflatedGammaModel.hpp
Boom/inst/include/Models/Hierarchical/HierarchicalDirichletModel.hpp
Boom/inst/include/Models/Hierarchical/HierarchicalPoissonModel.hpp
Boom/inst/include/Models/Hierarchical/HierarchicalZeroInflatedPoissonModel.hpp
Boom/inst/include/Models/Hierarchical/PosteriorSamplers
Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalGammaSampler.hpp
Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalDirichletPosteriorSampler.hpp
Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalZeroInflatedPoissonSampler.hpp
Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalZeroInflatedGammaSampler.hpp
Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalPoissonSampler.hpp
Boom/inst/include/Models/Hierarchical/HierarchicalGammaModel.hpp
Boom/inst/include/Models/Hierarchical/HierarchicalModel.hpp
Boom/inst/include/Models/CompositeData.hpp
Boom/inst/include/Models/ScaledChisqModel.hpp
Boom/inst/include/Models/DirichletModel.hpp
Boom/inst/include/Models/TimeSeries
Boom/inst/include/Models/TimeSeries/ArModel.hpp
Boom/inst/include/Models/TimeSeries/AugmentedTimeSeriesDataPolicy.hpp
Boom/inst/include/Models/TimeSeries/TimeSeriesSufstatDataPolicy.hpp
Boom/inst/include/Models/TimeSeries/TimeSeries.hpp
Boom/inst/include/Models/TimeSeries/TimeSeriesDataPolicy.hpp
Boom/inst/include/Models/TimeSeries/MarkovLink.hpp
Boom/inst/include/Models/TimeSeries/AugmentedTimeSeries.hpp
Boom/inst/include/Models/TimeSeries/PosteriorSamplers
Boom/inst/include/Models/TimeSeries/PosteriorSamplers/ArPosteriorSampler.hpp
Boom/inst/include/Models/TimeSeries/PosteriorSamplers/NonzeroMeanAr1Sampler.hpp
Boom/inst/include/Models/TimeSeries/PosteriorSamplers/ArSpikeSlabSampler.hpp
Boom/inst/include/Models/TimeSeries/NonzeroMeanAr1Model.hpp
Boom/inst/include/Models/DiscreteUniformModel.hpp
Boom/inst/include/Models/VectorModel.hpp
Boom/inst/include/Models/CategoricalData.hpp
Boom/inst/include/Models/MarkovModel.hpp
Boom/inst/include/r_interface
Boom/inst/include/r_interface/create_mixture_component.hpp
Boom/inst/include/r_interface/determine_nthreads.hpp
Boom/inst/include/r_interface/create_poisson_cluster_components.hpp
Boom/inst/include/r_interface/print_R_timestamp.hpp
Boom/inst/include/r_interface/boom_r_tools.hpp
Boom/inst/include/r_interface/handle_exception.hpp
Boom/inst/include/r_interface/create_point_process.hpp
Boom/inst/include/r_interface/create_poisson_process.hpp
Boom/inst/include/r_interface/seed_rng_from_R.hpp
Boom/inst/include/r_interface/create_state_model.hpp
Boom/inst/include/r_interface/parse_model_formula.hpp
Boom/inst/include/r_interface/list_io.hpp
Boom/inst/include/r_interface/prior_specification.hpp
Boom/inst/include/numopt.hpp
Boom/inst/include/uint.hpp
Boom/inst/include/numopt
Boom/inst/include/numopt/NumericalDerivatives.hpp
Boom/inst/include/numopt/Powell.hpp
Boom/inst/include/numopt/ScalarNewtonMax.hpp
Boom/inst/include/numopt/Integral.hpp
Boom/inst/include/numopt/Brent.hpp
Boom/inst/include/numopt/NelderMead.hpp
Boom/inst/include/numopt/ScalarLaplaceApproximation.hpp
Boom/inst/include/numopt/initialize_derivatives.hpp
Boom/inst/include/BOOM.hpp
Boom/src
Boom/src/create_mixture_component.cpp
Boom/src/Makevars
Boom/src/spike_slab_prior.cpp
Boom/src/math
Boom/src/math/special_functions.hpp
Boom/src/math/cephes
Boom/src/math/cephes/zetac.cpp
Boom/src/math/cephes/sici.cpp
Boom/src/math/cephes/zeta.cpp
Boom/src/math/cephes/planck.cpp
Boom/src/math/cephes/fresnl.cpp
Boom/src/math/cephes/powi.cpp
Boom/src/math/cephes/ei.cpp
Boom/src/math/cephes/polevl.cpp
Boom/src/math/cephes/expn.cpp
Boom/src/math/cephes/chbevl.cpp
Boom/src/math/cephes/polylog.cpp
Boom/src/math/cephes/fac.cpp
Boom/src/math/cephes/dawsn.cpp
Boom/src/math/cephes/rgamma.cpp
Boom/src/math/cephes/shichi.cpp
Boom/src/math/cephes/cephes_impl.hpp
Boom/src/math/cephes/spence.cpp
Boom/src/create_poisson_process.cpp
Boom/src/print_R_timestamp.cpp
Boom/src/handle_exception.cpp
Boom/src/install.libs.R
Boom/src/Samplers
Boom/src/Samplers/ScalarLangevinSampler.cpp
Boom/src/Samplers/MH_Proposals.cpp
Boom/src/Samplers/MoveAccounting.cpp
Boom/src/Samplers/Sampler.cpp
Boom/src/Samplers/MetropolisHastings.cpp
Boom/src/Samplers/RejectionSampler.cpp
Boom/src/Samplers/UnivariateLangevinSampler.cpp
Boom/src/Samplers/TIM.cpp
Boom/src/Samplers/ARMS.cpp
Boom/src/Samplers/SliceSampler.cpp
Boom/src/Samplers/ScalarAdaptiveRejectionSampler.cpp
Boom/src/Samplers/ImportanceResampler.cpp
Boom/src/Samplers/DirectProposal.cpp
Boom/src/Samplers/ScalarSliceSampler.cpp
Boom/src/Samplers/Gilks
Boom/src/Samplers/Gilks/arms.cpp
Boom/src/Samplers/UnivariateSliceSampler.cpp
Boom/src/create_poisson_cluster_components.cpp
Boom/src/distributions
Boom/src/distributions/Markov.cpp
Boom/src/distributions/rmulti.cpp
Boom/src/distributions/mvn.cpp
Boom/src/distributions/BinomialDistribution.cpp
Boom/src/distributions/Tn2Sampler.cpp
Boom/src/distributions/trun_logit.cpp
Boom/src/distributions/trun_norm.cpp
Boom/src/distributions/trun_exp.cpp
Boom/src/distributions/random_int.cpp
Boom/src/distributions/Rmath_dist.cpp
Boom/src/distributions/student_fix.cpp
Boom/src/distributions/rlexp.cpp
Boom/src/distributions/BoundedAdaptiveRejectionSampler.cpp
Boom/src/distributions/matrix_normal.cpp
Boom/src/distributions/usp.cpp
Boom/src/distributions/DoublyBoundedAdaptiveRejectionSampler.cpp
Boom/src/distributions/dirichlet.cpp
Boom/src/distributions/random_cor.cpp
Boom/src/distributions/trun_gamma.cpp
Boom/src/distributions/Wishart.cpp
Boom/src/distributions/extreme_value.cpp
Boom/src/distributions/rtriangle.cpp
Boom/src/distributions/rng.cpp
Boom/src/distributions/inverse_gaussian.cpp
Boom/src/distributions/mvt.cpp
Boom/src/list_io.cpp
Boom/src/LinAlg
Boom/src/LinAlg/Selector.cpp
Boom/src/LinAlg/QR.cpp
Boom/src/LinAlg/VectorView.cpp
Boom/src/LinAlg/Eigen.cpp
Boom/src/LinAlg/SubMatrix.cpp
Boom/src/LinAlg/Cholesky.cpp
Boom/src/LinAlg/Matrix.cpp
Boom/src/LinAlg/LinAlgExceptions.cpp
Boom/src/LinAlg/MatrixPartition.cpp
Boom/src/LinAlg/stack_columns.cpp
Boom/src/LinAlg/Givens.cpp
Boom/src/LinAlg/blas.cpp
Boom/src/LinAlg/SVD.cpp
Boom/src/LinAlg/Kronecker.cpp
Boom/src/LinAlg/Array.cpp
Boom/src/LinAlg/SWEEP.cpp
Boom/src/LinAlg/ArrayIterator.cpp
Boom/src/LinAlg/Vector.cpp
Boom/src/LinAlg/DiagonalMatrix.cpp
Boom/src/LinAlg/CorrelationMatrix.cpp
Boom/src/LinAlg/SpdMatrix.cpp
Boom/src/LinAlg/LU.cpp
Boom/src/LinAlg/Array3.cpp
Boom/src/create_state_model.cpp
Boom/src/cpputil
Boom/src/cpputil/is_numeric.cpp
Boom/src/cpputil/split_string.cpp
Boom/src/cpputil/is_all_white.cpp
Boom/src/cpputil/strip_path.cpp
Boom/src/cpputil/LongString.cpp
Boom/src/cpputil/strip.cpp
Boom/src/cpputil/report_error.cpp
Boom/src/cpputil/ParamHolder.cpp
Boom/src/cpputil/infinity.cpp
Boom/src/cpputil/strip_white_space.cpp
Boom/src/cpputil/split.cpp
Boom/src/cpputil/gll.cpp
Boom/src/cpputil/DateTime.cpp
Boom/src/cpputil/DefaultVnames.cpp
Boom/src/cpputil/get_date.cpp
Boom/src/cpputil/lse.cpp
Boom/src/cpputil/print_columns.cpp
Boom/src/cpputil/Constants.cpp
Boom/src/cpputil/read_file.cpp
Boom/src/cpputil/safelog.cpp
Boom/src/cpputil/rep.cpp
Boom/src/cpputil/str2d.cpp
Boom/src/cpputil/trim_white_space.cpp
Boom/src/cpputil/Date.cpp
Boom/src/cpputil/split_delimited.cpp
Boom/src/cpputil/OutputTable.cpp
Boom/src/cpputil/legalize_file_name.cpp
Boom/src/cpputil/parse_range.cpp
Boom/src/cpputil/Polynomial.cpp
Boom/src/cpputil/compare_vector_bool.cpp
Boom/src/cpputil/Redirector.cpp
Boom/src/cpputil/apply_permutation.cpp
Boom/src/cpputil/replace_all.cpp
Boom/src/cpputil/substring_delimited.cpp
Boom/src/cpputil/cat_string.cpp
Boom/src/boom_r_tools.cpp
Boom/src/TargetFun
Boom/src/TargetFun/ScalarLogpostTF.cpp
Boom/src/TargetFun/LogPost.cpp
Boom/src/TargetFun/JacobianChecker.cpp
Boom/src/TargetFun/TargetFun.cpp
Boom/src/TargetFun/Transformation.cpp
Boom/src/determine_nthreads.cpp
Boom/src/stats
Boom/src/stats/NaturalSpline.cpp
Boom/src/stats/diff.cpp
Boom/src/stats/ChiSquareTest.cpp
Boom/src/stats/regression.cpp
Boom/src/stats/compare_predictions.cpp
Boom/src/stats/Design.cpp
Boom/src/stats/DataTable.cpp
Boom/src/stats/Resampler.cpp
Boom/src/stats/IQagent.cpp
Boom/src/stats/Spline.cpp
Boom/src/stats/simple_random_sample.cpp
Boom/src/stats/Bspline.cpp
Boom/src/stats/ECDF.cpp
Boom/src/stats/moments.cpp
Boom/src/stats/FreqDist.cpp
Boom/src/stats/compare_binomial_proportions.cpp
Boom/src/Models
Boom/src/Models/TruncatedGammaModel.cpp
Boom/src/Models/ScaledChisqModel.cpp
Boom/src/Models/ZeroInflatedGammaModel.cpp
Boom/src/Models/FiniteMixtureModel.cpp
Boom/src/Models/LognormalModel.cpp
Boom/src/Models/MvtModel.cpp
Boom/src/Models/Glm
Boom/src/Models/Glm/ZeroInflatedGammaRegression.cpp
Boom/src/Models/Glm/MvnGivenX.cpp
Boom/src/Models/Glm/PoissonRegressionModel.cpp
Boom/src/Models/Glm/GlmCoefs.cpp
Boom/src/Models/Glm/HierarchicalPoissonRegression.cpp
Boom/src/Models/Glm/MvtRegModel.cpp
Boom/src/Models/Glm/GammaRegressionModel.cpp
Boom/src/Models/Glm/Glm.cpp
Boom/src/Models/Glm/ZeroInflatedPoissonRegression.cpp
Boom/src/Models/Glm/BinomialLogitModel.cpp
Boom/src/Models/Glm/LogisticRegressionModel.cpp
Boom/src/Models/Glm/ChoiceData.cpp
Boom/src/Models/Glm/BinomialRegressionData.cpp
Boom/src/Models/Glm/MvReg2.cpp
Boom/src/Models/Glm/OrdinalCutpointModel.cpp
Boom/src/Models/Glm/WeightedRegressionModel.cpp
Boom/src/Models/Glm/MvnGivenXandSigma.cpp
Boom/src/Models/Glm/BinomialProbitModel.cpp
Boom/src/Models/Glm/PosteriorSamplers
Boom/src/Models/Glm/PosteriorSamplers/GammaRegressionPosteriorSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/PoissonRegressionRwmSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/CumulativeProbitSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/VsPriorSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/LogitSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/ZeroInflatedLognormalRegressionPosteriorSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/TDataImputer.cpp
Boom/src/Models/Glm/PosteriorSamplers/draw_logit_lambda.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitSamplerTim.cpp
Boom/src/Models/Glm/PosteriorSamplers/BregVsSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/TRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/LogitSamplerBma.cpp
Boom/src/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/NormalMixtureApproximation.cpp
Boom/src/Models/Glm/PosteriorSamplers/PoissonDataImputer.cpp
Boom/src/Models/Glm/PosteriorSamplers/RegressionConjSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/ZeroInflatedPoissonRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/fill_poisson_mixture_approximation_table_1.cpp
Boom/src/Models/Glm/PosteriorSamplers/TRegressionSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/DAFE_MLM.cpp
Boom/src/Models/Glm/PosteriorSamplers/MlogitRwm.cpp
Boom/src/Models/Glm/PosteriorSamplers/MultinomialLogitCompleteDataSuf.cpp
Boom/src/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/fill_poisson_mixture_approximation_table_3.cpp
Boom/src/Models/Glm/PosteriorSamplers/PartRegSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialProbitCompositeSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MnpBetaSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitSamplerRwm.cpp
Boom/src/Models/Glm/PosteriorSamplers/SpikeSlabDaRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/AggregatedRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialProbitSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/fill_poisson_mixture_approximation_table_2.cpp
Boom/src/Models/Glm/PosteriorSamplers/MLVS.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/HierarchicalPoissonRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/poisson_mixture_approximation_table.cpp
Boom/src/Models/Glm/PosteriorSamplers/SpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/ProbitRegressionSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MvRegSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MvtRegSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MLVS_data_imputer.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitDataImputer.cpp
Boom/src/Models/Glm/PosteriorSamplers/CumulativeLogitSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialProbitTimSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MLAuxMixSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialProbitDataImputer.cpp
Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/ProbitSpikeSlabSampler.cpp
Boom/src/Models/Glm/PosteriorSamplers/MnpBetaGivenSigmaSampler.cpp
Boom/src/Models/Glm/VariableSelectionPrior.cpp
Boom/src/Models/Glm/PoissonRegressionData.cpp
Boom/src/Models/Glm/CumulativeLogitModel.cpp
Boom/src/Models/Glm/ZeroInflatedLognormalRegression.cpp
Boom/src/Models/Glm/MultinomialProbitModel.cpp
Boom/src/Models/Glm/CumulativeProbitModel.cpp
Boom/src/Models/Glm/ProbitRegression.cpp
Boom/src/Models/Glm/MultinomialLogitModel.cpp
Boom/src/Models/Glm/AggregatedRegressionModel.cpp
Boom/src/Models/Glm/RegressionModel.cpp
Boom/src/Models/Glm/TRegression.cpp
Boom/src/Models/WeightedMvnModel.cpp
Boom/src/Models/WeightedGaussianSuf.cpp
Boom/src/Models/CompositeVectorModel.cpp
Boom/src/Models/MvnGivenScalarSigma.cpp
Boom/src/Models/MvnBase.cpp
Boom/src/Models/IndependentMvnModelGivenScalarSigma.cpp
Boom/src/Models/ChisqModel.cpp
Boom/src/Models/GaussianModelGivenSigma.cpp
Boom/src/Models/PoissonGammaModel.cpp
Boom/src/Models/CompositeModel.cpp
Boom/src/Models/SpdParams.cpp
Boom/src/Models/BetaBinomialModel.cpp
Boom/src/Models/MvnGivenSigma.cpp
Boom/src/Models/DataTypes.cpp
Boom/src/Models/MvnModel.cpp
Boom/src/Models/IndependentMvnModel.cpp
Boom/src/Models/UniformModel.cpp
Boom/src/Models/GaussianModel.cpp
Boom/src/Models/Mixtures
Boom/src/Models/Mixtures/ConditionalFiniteMixtureModel.cpp
Boom/src/Models/Mixtures/PosteriorSamplers
Boom/src/Models/Mixtures/PosteriorSamplers/DirichletProcessMvnCollapsedGibbsSampler.cpp
Boom/src/Models/Mixtures/PosteriorSamplers/ConditionalFiniteMixtureSampler.cpp
Boom/src/Models/Mixtures/DirichletProcessMvnModel.cpp
Boom/src/Models/Policies
Boom/src/Models/Policies/MixtureDataPolicy.cpp
Boom/src/Models/Policies/ManyParamPolicy.cpp
Boom/src/Models/Policies/CompositeParamPolicy.cpp
Boom/src/Models/Policies/PriorPolicy.cpp
Boom/src/Models/Policies/NullParamPolicy.cpp
Boom/src/Models/ExponentialModel.cpp
Boom/src/Models/UniformShrinkagePriorModel.cpp
Boom/src/Models/CompositeData.cpp
Boom/src/Models/DiscreteUniformModel.cpp
Boom/src/Models/GaussianModelBase.cpp
Boom/src/Models/ModelTypes.cpp
Boom/src/Models/ParamTypes.cpp
Boom/src/Models/SpdModel.cpp
Boom/src/Models/MultinomialModel.cpp
Boom/src/Models/BetaModel.cpp
Boom/src/Models/HMM
Boom/src/Models/HMM/HmmFilter.cpp
Boom/src/Models/HMM/HMM2.cpp
Boom/src/Models/HMM/hmm_tools.cpp
Boom/src/Models/HMM/Clickstream
Boom/src/Models/HMM/Clickstream/NestedHmm.cpp
Boom/src/Models/HMM/Clickstream/Event.cpp
Boom/src/Models/HMM/Clickstream/Session.cpp
Boom/src/Models/HMM/Clickstream/Stream.cpp
Boom/src/Models/HMM/Clickstream/PosteriorSamplers
Boom/src/Models/HMM/Clickstream/PosteriorSamplers/NestedHmmPosteriorSampler.cpp
Boom/src/Models/HMM/PosteriorSamplers
Boom/src/Models/HMM/PosteriorSamplers/HmmPosteriorSampler.cpp
Boom/src/Models/HMM/HmmDataImputer.cpp
Boom/src/Models/HMM/HealthStateModel.cpp
Boom/src/Models/ZeroMeanGaussianModel.cpp
Boom/src/Models/ConstrainedVectorParams.cpp
Boom/src/Models/ProductDirichletModel.cpp
Boom/src/Models/CategoricalData.cpp
Boom/src/Models/UniformCorrelationModel.cpp
Boom/src/Models/GammaModel.cpp
Boom/src/Models/Bart
Boom/src/Models/Bart/PoissonBartModel.cpp
Boom/src/Models/Bart/GaussianBartModel.cpp
Boom/src/Models/Bart/ProbitBartModel.cpp
Boom/src/Models/Bart/Bart.cpp
Boom/src/Models/Bart/GaussianLinearBartModel.cpp
Boom/src/Models/Bart/PosteriorSamplers
Boom/src/Models/Bart/PosteriorSamplers/ProbitBartPosteriorSampler.cpp
Boom/src/Models/Bart/PosteriorSamplers/GaussianBartPosteriorSampler.cpp
Boom/src/Models/Bart/PosteriorSamplers/PoissonBartPosteriorSampler.cpp
Boom/src/Models/Bart/PosteriorSamplers/GaussianLinearBartPosteriorSampler.cpp
Boom/src/Models/Bart/PosteriorSamplers/LogitBartPosteriorSampler.cpp
Boom/src/Models/Bart/PosteriorSamplers/BartPosteriorSampler.cpp
Boom/src/Models/Bart/ResidualRegressionData.cpp
Boom/src/Models/Bart/LogitBartModel.cpp
Boom/src/Models/PosteriorSamplers
Boom/src/Models/PosteriorSamplers/ZeroInflatedGammaPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/FixedProbBinomialSampler.cpp
Boom/src/Models/PosteriorSamplers/BetaPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/SepStratSampler.cpp
Boom/src/Models/PosteriorSamplers/GammaPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/ExponentialGammaSampler.cpp
Boom/src/Models/PosteriorSamplers/ZeroInflatedLognormalPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/ZeroInflatedPoissonSampler.cpp
Boom/src/Models/PosteriorSamplers/GaussianVarSampler.cpp
Boom/src/Models/PosteriorSamplers/IndependentMvnConjSampler.cpp
Boom/src/Models/PosteriorSamplers/ExchangeableDirichletSampler.cpp
Boom/src/Models/PosteriorSamplers/ZeroMeanGaussianConjSampler.cpp
Boom/src/Models/PosteriorSamplers/SharedSigsqSampler.cpp
Boom/src/Models/PosteriorSamplers/CompositeModelSampler.cpp
Boom/src/Models/PosteriorSamplers/BetaBinomialSampler.cpp
Boom/src/Models/PosteriorSamplers/ZeroMeanMvnIndependenceSampler.cpp
Boom/src/Models/PosteriorSamplers/MarkovConjSampler.cpp
Boom/src/Models/PosteriorSamplers/PoissonGammaSampler.cpp
Boom/src/Models/PosteriorSamplers/MvnVarSampler.cpp
Boom/src/Models/PosteriorSamplers/MvnIndependentVarianceSampler.cpp
Boom/src/Models/PosteriorSamplers/MarkovConjShrinkageSampler.cpp
Boom/src/Models/PosteriorSamplers/ProductDirichletPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/GaussianConjSampler.cpp
Boom/src/Models/PosteriorSamplers/CompositeSampler.cpp
Boom/src/Models/PosteriorSamplers/ZeroMeanMvnConjSampler.cpp
Boom/src/Models/PosteriorSamplers/CorrelationSampler.cpp
Boom/src/Models/PosteriorSamplers/PoissonGammaPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/IndependentMvnVarSampler.cpp
Boom/src/Models/PosteriorSamplers/MultinomialDirichletSampler.cpp
Boom/src/Models/PosteriorSamplers/MvnConjSampler.cpp
Boom/src/Models/PosteriorSamplers/AbsorbingMarkovConjSampler.cpp
Boom/src/Models/PosteriorSamplers/PosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/BetaBinomialPosteriorSampler.cpp
Boom/src/Models/PosteriorSamplers/GenericGaussianVarianceSampler.cpp
Boom/src/Models/PosteriorSamplers/MvnMeanSampler.cpp
Boom/src/Models/PosteriorSamplers/GaussianMeanSampler.cpp
Boom/src/Models/PosteriorSamplers/DirichletPosteriorSampler.cpp
Boom/src/Models/Sufstat.cpp
Boom/src/Models/StateSpace
Boom/src/Models/StateSpace/StateSpaceLogitModel.cpp
Boom/src/Models/StateSpace/StateSpaceNormalMixture.cpp
Boom/src/Models/StateSpace/StateSpaceModel.cpp
Boom/src/Models/StateSpace/StateSpacePoissonModel.cpp
Boom/src/Models/StateSpace/AggregatedStateSpaceRegression.cpp
Boom/src/Models/StateSpace/PosteriorSamplers
Boom/src/Models/StateSpace/PosteriorSamplers/AggregatedStateSpacePosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/StateSpaceLogitPosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/StateSpacePosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/StateSpaceStudentPosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/StateSpacePoissonPosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/DynamicRegressionPosteriorSampler.cpp
Boom/src/Models/StateSpace/PosteriorSamplers/StudentLocalLinearTrendPosteriorSampler.cpp
Boom/src/Models/StateSpace/StateSpaceStudentRegressionModel.cpp
Boom/src/Models/StateSpace/Filters
Boom/src/Models/StateSpace/Filters/KalmanTools.cpp
Boom/src/Models/StateSpace/Filters/SparseKalmanTools.cpp
Boom/src/Models/StateSpace/Filters/SparseMatrix.cpp
Boom/src/Models/StateSpace/Filters/SparseVector.cpp
Boom/src/Models/StateSpace/StateSpaceRegressionModel.cpp
Boom/src/Models/StateSpace/StateModels
Boom/src/Models/StateSpace/StateModels/RandomWalkHolidayStateModel.cpp
Boom/src/Models/StateSpace/StateModels/TrigStateModel.cpp
Boom/src/Models/StateSpace/StateModels/DynamicRegressionStateModel.cpp
Boom/src/Models/StateSpace/StateModels/LocalLevelStateModel.cpp
Boom/src/Models/StateSpace/StateModels/LocalLinearTrend.cpp
Boom/src/Models/StateSpace/StateModels/SeasonalStateModel.cpp
Boom/src/Models/StateSpace/StateModels/StudentLocalLinearTrend.cpp
Boom/src/Models/StateSpace/StateModels/Holiday.cpp
Boom/src/Models/StateSpace/StateModels/LocalLinearTrendMeanRevertingSlope.cpp
Boom/src/Models/StateSpace/StateModels/StateModel.cpp
Boom/src/Models/StateSpace/StateModels/RegressionStateModel.cpp
Boom/src/Models/StateSpace/StateModels/ArStateModel.cpp
Boom/src/Models/StateSpace/StateSpaceModelBase.cpp
Boom/src/Models/WishartModel.cpp
Boom/src/Models/PointProcess
Boom/src/Models/PointProcess/WeeklyCyclePoissonProcess.cpp
Boom/src/Models/PointProcess/MarkovModulatedPoissonProcess.cpp
Boom/src/Models/PointProcess/PoissonClusterProcess.cpp
Boom/src/Models/PointProcess/HomogeneousPoissonProcess.cpp
Boom/src/Models/PointProcess/BoundedPoissonProcessSimulator.cpp
Boom/src/Models/PointProcess/PosteriorSamplers
Boom/src/Models/PointProcess/PosteriorSamplers/HomogeneousPoissonProcessPosteriorSampler.cpp
Boom/src/Models/PointProcess/PosteriorSamplers/MarkovModulatedPoissonProcessPosteriorSampler.cpp
Boom/src/Models/PointProcess/PosteriorSamplers/WeeklyCyclePoissonProcessSampler.cpp
Boom/src/Models/PointProcess/CosinePoissonProcess.cpp
Boom/src/Models/PointProcess/PointProcess.cpp
Boom/src/Models/ZeroInflatedLognormalModel.cpp
Boom/src/Models/SpdData.cpp
Boom/src/Models/DirichletModel.cpp
Boom/src/Models/IRT
Boom/src/Models/IRT/DafePcrItemSampler.cpp
Boom/src/Models/IRT/PartialCreditModel.cpp
Boom/src/Models/IRT/SubjectSliceSampler.cpp
Boom/src/Models/IRT/DafePcrRwmItemSampler.cpp
Boom/src/Models/IRT/DafePcrDataImputer.cpp
Boom/src/Models/IRT/IrtModel.cpp
Boom/src/Models/IRT/SubjectPrior.cpp
Boom/src/Models/IRT/Item.cpp
Boom/src/Models/IRT/DafePcrSubject.cpp
Boom/src/Models/IRT/Subject.cpp
Boom/src/Models/IRT/DafePcrRwmSubject.cpp
Boom/src/Models/IRT/IRT.cpp
Boom/src/Models/PoissonModel.cpp
Boom/src/Models/MarginallyUniformCorrelationModel.cpp
Boom/src/Models/Hierarchical
Boom/src/Models/Hierarchical/HierarchicalZeroInflatedPoissonModel.cpp
Boom/src/Models/Hierarchical/HierarchicalZeroInflatedGammaModel.cpp
Boom/src/Models/Hierarchical/PosteriorSamplers
Boom/src/Models/Hierarchical/PosteriorSamplers/HierarchicalZeroInflatedPoissonSampler.cpp
Boom/src/Models/Hierarchical/PosteriorSamplers/HierarchicalDirichletPosteriorSampler.cpp
Boom/src/Models/Hierarchical/PosteriorSamplers/HierarchicalGammaSampler.cpp
Boom/src/Models/Hierarchical/PosteriorSamplers/HierarchicalPoissonSampler.cpp
Boom/src/Models/Hierarchical/PosteriorSamplers/HierarchicalZeroInflatedGammaSampler.cpp
Boom/src/Models/Hierarchical/HierarchicalGammaModel.cpp
Boom/src/Models/Hierarchical/HierarchicalDirichletModel.cpp
Boom/src/Models/Hierarchical/HierarchicalPoissonModel.cpp
Boom/src/Models/MarkovModel.cpp
Boom/src/Models/ZeroInflatedPoissonModel.cpp
Boom/src/Models/ZeroMeanMvnModel.cpp
Boom/src/Models/TimeSeries
Boom/src/Models/TimeSeries/NonzeroMeanAr1Model.cpp
Boom/src/Models/TimeSeries/PosteriorSamplers
Boom/src/Models/TimeSeries/PosteriorSamplers/ArSpikeSlabSampler.cpp
Boom/src/Models/TimeSeries/PosteriorSamplers/ArPosteriorSampler.cpp
Boom/src/Models/TimeSeries/PosteriorSamplers/NonzeroMeanAr1Sampler.cpp
Boom/src/Models/TimeSeries/ArModel.cpp
Boom/src/Models/BinomialModel.cpp
Boom/src/prior_specification.cpp
Boom/src/numopt
Boom/src/numopt/newton.cpp
Boom/src/numopt/ScalarNewtonMax.cpp
Boom/src/numopt/NelderMead.cpp
Boom/src/numopt/simulated_annealing.cpp
Boom/src/numopt/initialize_derivatives.cpp
Boom/src/numopt/NumericalDerivatives.cpp
Boom/src/numopt/Negate.cpp
Boom/src/numopt/nelder_mead.cpp
Boom/src/numopt/bfgs.cpp
Boom/src/numopt/ScalarLaplaceApproximation.cpp
Boom/src/numopt/conj_grad.cpp
Boom/src/numopt/Integral.cpp
Boom/src/numopt/Powell.cpp
Boom/src/numopt/Brent.cpp
Boom/src/numopt/max_nd.cpp
Boom/src/parse_model_formula.cpp
Boom/src/Bmath
Boom/src/Bmath/mlutils.cpp
Boom/src/Bmath/rnchisq.cpp
Boom/src/Bmath/gammalims.cpp
Boom/src/Bmath/dhyper.cpp
Boom/src/Bmath/ptukey.cpp
Boom/src/Bmath/sexp.cpp
Boom/src/Bmath/rhyper.cpp
Boom/src/Bmath/qbinom.cpp
Boom/src/Bmath/fsign.cpp
Boom/src/Bmath/dcauchy.cpp
Boom/src/Bmath/dnbinom.cpp
Boom/src/Bmath/qweibull.cpp
Boom/src/Bmath/toms708.cpp
Boom/src/Bmath/ftrunc.cpp
Boom/src/Bmath/dpq.hpp
Boom/src/Bmath/dnorm.cpp
Boom/src/Bmath/bd0.cpp
Boom/src/Bmath/rnbinom.cpp
Boom/src/Bmath/snorm.cpp
Boom/src/Bmath/qf.cpp
Boom/src/Bmath/qnorm.cpp
Boom/src/Bmath/fround.cpp
Boom/src/Bmath/phyper.cpp
Boom/src/Bmath/pbeta.cpp
Boom/src/Bmath/qbeta.cpp
Boom/src/Bmath/nmath.hpp
Boom/src/Bmath/rexp.cpp
Boom/src/Bmath/dlogis.cpp
Boom/src/Bmath/pgeom.cpp
Boom/src/Bmath/rnorm.cpp
Boom/src/Bmath/rt.cpp
Boom/src/Bmath/rbinom.cpp
Boom/src/Bmath/pweibull.cpp
Boom/src/Bmath/qnchisq.cpp
Boom/src/Bmath/pt.cpp
Boom/src/Bmath/rweibull.cpp
Boom/src/Bmath/unif_rand.cpp
Boom/src/Bmath/rlnorm.cpp
Boom/src/Bmath/Random.hpp
Boom/src/Bmath/stirlerr.cpp
Boom/src/Bmath/dgamma.cpp
Boom/src/Bmath/rgeom.cpp
Boom/src/Bmath/sign.cpp
Boom/src/Bmath/pexp.cpp
Boom/src/Bmath/mathlib_error.cpp
Boom/src/Bmath/pf.cpp
Boom/src/Bmath/qnbinom.cpp
Boom/src/Bmath/choose.cpp
Boom/src/Bmath/polygamma.cpp
Boom/src/Bmath/qtukey.cpp
Boom/src/Bmath/pnt.cpp
Boom/src/Bmath/plogis.cpp
Boom/src/Bmath/lbeta.cpp
Boom/src/Bmath/dpois.cpp
Boom/src/Bmath/gamma_cody.cpp
Boom/src/Bmath/rmultinom.cpp
Boom/src/Bmath/pchisq.cpp
Boom/src/Bmath/dnbeta.cpp
Boom/src/Bmath/pnbeta.cpp
Boom/src/Bmath/pcauchy.cpp
Boom/src/Bmath/pnbinom.cpp
Boom/src/Bmath/qexp.cpp
Boom/src/Bmath/qhyper.cpp
Boom/src/Bmath/rgamma.cpp
Boom/src/Bmath/fprec.cpp
Boom/src/Bmath/punif.cpp
Boom/src/Bmath/Bmath.hpp
Boom/src/Bmath/dt.cpp
Boom/src/Bmath/runif.cpp
Boom/src/Bmath/dunif.cpp
Boom/src/Bmath/qgamma.cpp
Boom/src/Bmath/i1mach.cpp
Boom/src/Bmath/dchisq.cpp
Boom/src/Bmath/qlnorm.cpp
Boom/src/Bmath/qgeom.cpp
Boom/src/Bmath/lgammacor.cpp
Boom/src/Bmath/rlogis.cpp
Boom/src/Bmath/rchisq.cpp
Boom/src/Bmath/d1mach.cpp
Boom/src/Bmath/pnorm.cpp
Boom/src/Bmath/qlogis.cpp
Boom/src/Bmath/qcauchy.cpp
Boom/src/Bmath/beta.cpp
Boom/src/Bmath/df.cpp
Boom/src/Bmath/dweibull.cpp
Boom/src/Bmath/dlnorm.cpp
Boom/src/Bmath/ppois.cpp
Boom/src/Bmath/plnorm.cpp
Boom/src/Bmath/dbeta.cpp
Boom/src/Bmath/dnchisq.cpp
Boom/src/Bmath/qt.cpp
Boom/src/Bmath/dbinom.cpp
Boom/src/Bmath/qunif.cpp
Boom/src/Bmath/rf.cpp
Boom/src/Bmath/pnchisq.cpp
Boom/src/Bmath/pnf.cpp
Boom/src/Bmath/qchisq.cpp
Boom/src/Bmath/pbinom.cpp
Boom/src/Bmath/dgeom.cpp
Boom/src/Bmath/rpois.cpp
Boom/src/Bmath/qpois.cpp
Boom/src/Bmath/pgamma.cpp
Boom/src/Bmath/rcauchy.cpp
Boom/src/Bmath/rbeta.cpp
Boom/src/Bmath/chebyshev.cpp
Boom/src/Bmath/dexp.cpp
Boom/src/Interfaces
Boom/src/Interfaces/R
Boom/src/Interfaces/R/BoomInterface
Boom/src/Interfaces/R/BoomInterface/test
Boom/src/Interfaces/R/BoomInterface/test/generate_factor_data_test.R
Boom/src/Interfaces/R/BoomInterface/test/match_data_frame_test.R
Boom/src/Interfaces/R/BoomInterface/test/testdriver.R
Boom/src/create_point_process.cpp
Boom/src/extract_mixture_data.cpp
Boom/src/seed_rng_from_R.cpp
Boom/NAMESPACE
Boom/R
Boom/R/histabunch.R
Boom/R/compare.vector.distribution.R
Boom/R/match_data_frame.R
Boom/R/pairs.density.R
Boom/R/boxplot.mcmc.matrix.R
Boom/R/suggest_burn_log_likelihood.R
Boom/R/compare.many.ts.R
Boom/R/boxplot.true.R
Boom/R/add.segments.R
Boom/R/compare.many.densities.R
Boom/R/plot.macf.R
Boom/R/external.legend.R
Boom/R/plot.many.ts.R
Boom/R/compare.den.R
Boom/R/plot.dynamic.distribution.R
Boom/R/check.data.R
Boom/R/prior_specification.R
Boom/R/generate_factor_data.R
Boom/R/thin.R
Boom/R/is.even.R
Boom/MD5
Boom/DESCRIPTION
Boom/man
Boom/man/histabunch.Rd
Boom/man/check.data.Rd
Boom/man/plot.macf.Rd
Boom/man/mvn.diagonal.prior.Rd
Boom/man/double.model.Rd
Boom/man/normal.inverse.gamma.prior.Rd
Boom/man/mvn.independent.sigma.prior.Rd
Boom/man/normal.inverse.wishart.prior.Rd
Boom/man/compare.vector.distributions.Rd
Boom/man/plot.density.contours.Rd
Boom/man/compare.many.densities.Rd
Boom/man/generate_factor_data.Rd
Boom/man/boxplot.true.Rd
Boom/man/beta.prior.Rd
Boom/man/boxplot.mcmc.matrix.Rd
Boom/man/ar1.coefficient.prior.Rd
Boom/man/gamma.prior.Rd
Boom/man/pairs.density.Rd
Boom/man/dirichlet.prior.Rd
Boom/man/lognormal.prior.Rd
Boom/man/plot.dynamic.distribution.Rd
Boom/man/add.segments.Rd
Boom/man/compare.den.Rd
Boom/man/thin.Rd
Boom/man/external.legend.Rd
Boom/man/suggest.burn.log.likelihood.Rd
Boom/man/mvn.prior.Rd
Boom/man/compare.many.ts.Rd
Boom/man/discrete-uniform-prior.Rd
Boom/man/sd.prior.Rd
Boom/man/match_data_frame.Rd
Boom/man/markov.prior.Rd
Boom/man/is.even.Rd
Boom/man/plot.many.ts.Rd
Boom/man/normal.prior.Rd
Boom/man/uniform.prior.Rd
Boom/LICENSE