Man pages for BreedingSchemeLanguage
Describe and Simulate Breeding Schemes
| addProgenyData | Add progeny information to data after cross, doubledHaploid,... |
| calcAmatrix | Calculate an additive relationship matrix |
| calcGenotypicValue | calcGenotypicValue |
| calcPhenotypicValue | calcPhenotypicValue |
| cross | Cross with random mating, or equal contributions, or randomly... |
| defineCosts | Define the costs that go into breeding Default for some costs... |
| defineSpecies | Define and create species |
| defineVariances | Define genetic, interaction, and error variances |
| DH | DH |
| doubledHaploid | Doubled haploids |
| genotype | Genotype markers |
| getCoalescentSim | getCoalescentSim |
| initializePopulation | Create a founder population |
| makeDHs | makeDHs |
| makeGamete | makeGamete |
| makeMap | create map and QTL effects |
| makeProgenies | makeProgenies |
| makeProgeny | makeProgeny |
| makeSelfs | makeSelfs |
| outputResults | Save the results |
| pedigreeMate | pedigreeMate |
| phasedHapMap2mat | Transform a data.frame with a hapmap data in it into a marker... |
| phenotype | Evaluate the phenotypic value |
| plotData | Plot the results |
| predGameteMeanVar | predGameteMeanVar |
| predictValue | Genomic prediction |
| randomMate | randomMate |
| randomMateAll | randomMateAll |
| randomMateNoFam | randomMateNoFam |
| select | Select individuals |
| selfFertilize | Self-fertilize |
| simHapMap | Generate a data.frame with a hapmap data in it to test... |
| testParameterOptimality | Function to return the optimality of a parameter vector for a... |
