simHapMap: Generate a data.frame with a hapmap data in it to test...

In BreedingSchemeLanguage: Describe and Simulate Breeding Schemes

Description

Generate a data.frame with a hapmap data in it to test phasedHapMap2mat

Usage

simHapMap(nInd = 200, nMrk = 1050, nChr = 7, lenChr = 150,
  maf = stats::runif(nMrk), nCharCode = 2, nQTL = NULL,
  propDomi = NULL, interactionMean = NULL, varEffects = NULL)

Arguments

nInd	The number of individuals with marker data
nMrk	The number of markers
nChr	The number of chromosomes the species has
lenChr	The length of the chromosomes (all equal) in cM
maf	The desired minor allele frequency of each marker
nCharCode	Whether the genotype codes should be one or two characters
nQTL	If you want to put QTL information in the hapmap
propDomi	proportion of QTL that act dominantly
interactionMean	average number of loci interacting with QTL: Poisson
varEffects	variance of the QTL effects

Value

A data.frame with hapmap data in it

BreedingSchemeLanguage documentation built on May 2, 2019, 10:17 a.m.