predictValue: Genomic prediction

In BreedingSchemeLanguage: Describe and Simulate Breeding Schemes

Description

Genomic prediction

Usage

predictValue(sEnv = NULL, popID = NULL, trainingPopID = NULL,
  locations = NULL, years = NULL, sharingInfo = NULL)

Arguments

sEnv	the environment that BSL functions operate in. If NULL, the default simEnv is attempted
popID	population ID to be predicted (default: the latest population)
trainingPopID	population ID to be used for training a prediction model (default: all populations with phenotype data). NOTE: if sharingInfo="none" this parameter has no effect.
locations	data from which locations should be used (default: all locations)
years	data from which years should be used (default: all years)
sharingInfo	one of "none", "markers", "pedigree". If none, genotypic values are assumed IID. If markers or pedigree, a genomic or pedigree relationship matrix is constructed

Value

modifies the list sims in environment sEnv by calculating predicted values as specified and changing the default selection criterion to use them

BreedingSchemeLanguage documentation built on May 2, 2019, 10:17 a.m.