API for Brundle
Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
| Global functions | |
|---|---|
| Brundle | Man page |
| dbaControl | Man page |
| dbaExperiment | Man page |
| jg.applyNormalisation | Man page |
| jg.conditions | Man page |
| jg.controlCountsTreated | Man page |
| jg.controlCountsUntreated | Man page |
| jg.controlPeaks | Man page |
| jg.controlPeakset | Man page |
| jg.controlPeaksetDeSeq | Man page |
| jg.controlResultsDeseq | Man page |
| jg.convertPeakset | Man page |
| jg.correctDBASizeFactors | Man page |
| jg.countAlignedMReads | Man page |
| jg.dbaGetPeakset | Man page |
| jg.experimentPeakset | Man page |
| jg.experimentResultsDeseq | Man page |
| jg.getControlCounts | Man page |
| jg.getCorrectionFactor | Man page |
| jg.getDba | Man page |
| jg.getNormalizationCoefficient | Man page |
| jg.getSampleIds | Man page |
| jg.plotDeSeq | Man page |
| jg.plotDeSeqCombined | Man page |
| jg.plotMA | Man page |
| jg.plotNormalization | Man page |
| jg.runDeSeq | Man page |
