jg.plotNormalization: jg.plotNormalization

In Brundle: Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data

Description

This function allows the user to visualize the normalisation. It is not needed for the pipeline but provides a helpful illustration of the process.

Usage

jg.plotNormalization(jg.controlCountsTreated, jg.controlCountsUntreated)

Arguments

jg.controlCountsTreated	Control counts extracted from the Diffbind object for the treated condition using jg.getControlCounts
jg.controlCountsUntreated	Control ounts extracted from the Diffbind object for the untreated condition using jg.getControlCounts

Examples

data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.plotNormalization(jg.controlCountsTreated, jg.controlCountsUntreated)

Brundle documentation built on May 2, 2019, 10:14 a.m.