jg.getNormalizationCoefficient: jg.getNormalizationCoefficient

In Brundle: Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data

Description

This function allows the user to caryy out the normalisation and returns a coefficient by using a linear fit to the control data.

Usage

jg.getNormalizationCoefficient(jg.controlCountsTreated,
  jg.controlCountsUntreated)

Arguments

jg.controlCountsTreated	Control counts extracted from the Diffbind object for the treated condition using jg.getControlCounts
jg.controlCountsUntreated	Control ounts extracted from the Diffbind object for the untreated condition using jg.getControlCounts

Examples

data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.coefficient<-jg.getNormalizationCoefficient(jg.controlCountsTreated,
                                                  jg.controlCountsUntreated)

Brundle documentation built on May 2, 2019, 10:14 a.m.