jg.plotMA: jg.plotMA

Description Usage Arguments

Description

This function plots both the control and experimental data on an MA plot. It also allows for the user to provide a normalisation coefficient for the data.

Usage

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jg.plotMA(jg.experimentPeakset, jg.controlPeakset, jg.untreatedNames,
  jg.treatedNames, jg.coefficient)

Arguments

jg.experimentPeakset

is the peakset of the experimental data extracted from a DiffBind ojbect with jg.dbaGetPeakset

jg.controlPeakset

is the peakset of the control data extracted from a DiffBind ojbect with jg.dbaGetPeakset

jg.untreatedNames

is a list of sample names for the control or untreated conditions

jg.treatedNames

is a list of sample samples for the treated conditions

jg.coefficient

is a normalisation coefficient for the data that can be generated via the pipeline. Can be set to 1 to view before normalisation.


Brundle documentation built on May 2, 2019, 10:14 a.m.