Files in Brundle
Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
MD5
DESCRIPTION
README.md
NAMESPACE
inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
R/brundle-data.R
R/brundle.R
man/jg.applyNormalisation.Rd
man/jg.controlPeakset.Rd
man/jg.controlCountsUntreated.Rd
man/jg.experimentPeakset.Rd
man/jg.controlResultsDeseq.Rd
man/jg.plotDeSeq.Rd
man/jg.conditions.Rd
man/jg.getControlCounts.Rd
man/dbaControl.Rd
man/jg.controlPeaks.Rd
man/jg.getDba.Rd
man/jg.convertPeakset.Rd
man/jg.correctDBASizeFactors.Rd
man/jg.plotMA.Rd
man/Brundle.Rd
man/jg.experimentResultsDeseq.Rd
man/jg.getCorrectionFactor.Rd
man/jg.runDeSeq.Rd
man/jg.getNormalizationCoefficient.Rd
man/jg.controlCountsTreated.Rd
man/jg.getSampleIds.Rd
man/jg.controlPeaksetDeSeq.Rd
man/dbaExperiment.Rd
man/jg.countAlignedMReads.Rd
man/jg.plotNormalization.Rd
man/jg.plotDeSeqCombined.Rd
man/jg.dbaGetPeakset.Rd
data/jg.controlPeakset.rda
data/jg.controlCountsUntreated.rda
data/jg.experimentPeakset.rda
data/jg.controlCountsTreated.rda
data/jg.controlPeaksetDeSeq.rda
data/jg.conditions.rda
data/dbaExperiment.rda
data/jg.experimentResultsDeseq.rda
data/jg.controlResultsDeseq.rda
data/dbaControl.rda
