jg.correctDBASizeFactors: jg.correctDBASizeFactors

Description Usage Arguments Examples

Description

Correct the size factors in a DiffBind object using our DESeq2 pipeline for normalisation.

Usage

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jg.correctDBASizeFactors(dba, jg.controlSizeFactors)

Arguments

dba

Diffbind object to have size factors corrected

jg.controlSizeFactors

Vector of replacement size factors

Examples

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data(jg.controlPeaksetDeSeq,package="Brundle")
data(dbaExperiment,package="Brundle")
jg.controlSizeFactors = estimateSizeFactorsForMatrix(jg.controlPeaksetDeSeq)
jg.correctDBASizeFactors(dbaExperiment,jg.controlSizeFactors)

Brundle documentation built on May 2, 2019, 10:14 a.m.