jg.getDba: jg.getDba

In Brundle: Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data

Description

Generates a DiffBind object from a valid SampleSheet with the required data for normalisation. No examples are provided as BAM files are not included in this package.

Usage

jg.getDba(jg.experimentSampleSheet, dbaSummits, ...)

Arguments

jg.experimentSampleSheet	is the filename of samplesheet to be loaded
dbaSummits	is the peak width in bp from summits (optional)
...	are the parameters to be passed to DiffBinds dba.count function

Brundle documentation built on May 2, 2019, 10:14 a.m.