jg.plotDeSeq: jg.plotDeSeq

Description Usage Arguments Examples

Description

Plots the output from DESeq2 for the Brundle pipeline

Usage

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jg.plotDeSeq(ma.df, p = 0.01, title.main = "Differential ChIP",
  log2fold = 0.5, flip = FALSE)

Arguments

ma.df

is the result Dataframe from DESeq2

p

is the minimum FDR to highlight as significant

title.main

is the plot title

log2fold

is the minimum log2 fold change for highlighted points

flip

when set to TRUE flips the data

Examples

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Brundle documentation built on May 2, 2019, 10:14 a.m.