Man pages for COMBIA
Synergy/Antagonism Analyses of Drug Combinations
| analyzeCOMBO | This function calculates significant synergy/antagonism... |
| applyBliss | Function calculates Bliss Synergy, associated BIs and global... |
| applyLoewe | This function calculates Loewe synergy/antagonism and... |
| calculateSi | Calculates survival indices (S.Is) for a range of wells... |
| combineDataFromMultipleFiles | Combine data from multiple files |
| createUniquePertbs | Function to make unique perturbations of the replicates these... |
| cVCal | This function calculates CV |
| extractKey | Extracts the keyvalues (Barcode) from a dataset, every plate... |
| extractReplicateValues | This function will takes a list of ranges removes case wells... |
| extractValuesFromRange | This function extract numerical indices of a given range e-g... |
| loeweModel | This function applies Loewe Model |
| readFile | Reads experimental data from a file. This function reads the... |
| readFluostarPlates | Read a file and process it to calculate the Survival... |
| readFMCAValues | Read data from raw FMCA format and clean for outliers |
| readMacSynergyValues | Read data from macsynergyII formate and clean for outliers |
| readOtherValues | Read data from raw format and clean for outliers |
| removeOutliers | This function Remove Outliers |
| selectPlate | Select one of the two read plates and built a hashtable. One... |
| synAntPlot | This function plots the synergy analysis 2D and 3D graphs |
| synergySignificant | Function calculates significant synergy/antagonism |
