synAntPlot: This function plots the synergy analysis 2D and 3D graphs

In COMBIA: Synergy/Antagonism Analyses of Drug Combinations

Description

This function plots the synergy analysis 2D and 3D graphs

Usage

synAntPlot(processedData, xConcentration, yConcentration, xDrug, yDrug,
  cellLine)

Arguments

processedData	A matrix to plot
xConcentration	X drug concentrations
yConcentration	Y drug concentrations
xDrug	X drug name
yDrug	Y drug name
cellLine	Cell line name

Value

Plot the values

Author(s)

Muhammad kashif

Examples

dataFile <- system.file("extdata", "processedData.csv", package="COMBIA")
procData <- read.csv( dataFile, header=FALSE)
xConc <- c(0.00,  0.20, 0.39, 0.78,  1.56,  3.12,  6.25, 12.50, 25.00, 50) 
yConc <- c(128,  64,  32,  16,   8,   4,   2,   0)
xD <- "X_Drug"
yD <- "Y_Drug"
clN <- "myCell"
rslt <- synAntPlot(as.matrix(procData),xConc,yConc, xD, yD, clN)  

Example output

Loading required package: hash
hash-3.0.1 provided by Decision Patterns

Loading required package: lattice
Loading required package: latticeExtra
Loading required package: RColorBrewer
Loading required package: oro.nifti
oro.nifti 0.9.1
              V1          V2         V3        V4         V5          V6
[1,]  0.00000000  0.00000000 0.25989760 0.2538782 0.16603139  0.08041507
[2,]  0.00000000  0.00000000 0.28082566 0.2879691 0.17660829  0.06525886
[3,]  0.00000000  0.00000000 0.26560141 0.2946654 0.15034116  0.00000000
[4,]  0.05958326  0.00000000 0.06422998 0.3044513 0.14793926  0.00000000
[5,]  0.00000000  0.00000000 0.12390636 0.2638135 0.09901874  0.00000000
[6,] -0.05179429 -0.09567589 0.04917759 0.2300680 0.07806757 -0.05999185
[7,] -0.11921161 -0.11945094 0.00000000 0.1635746 0.00000000 -0.09126266
             V7 V8 V9
[1,]  0.0000000  0  0
[2,]  0.0000000  0  0
[3,]  0.0000000  0  0
[4,]  0.0000000  0  0
[5,] -0.0547658  0  0
[6,] -0.1062496  0  0
[7,] -0.1084951  0  0

COMBIA documentation built on May 2, 2019, 7:23 a.m.