readFMCAValues: Read data from raw FMCA format and clean for outliers

In COMBIA: Synergy/Antagonism Analyses of Drug Combinations

Description

Read data from raw FMCA format and clean for outliers

Usage

readFMCAValues(file, platetype, keyposition, selectionkey, platekey, wells,
  minThersholdForCVCal, minThersholdForCV, yConcentration, xConcentration)

Arguments

file	Name of file to be read
platetype	384 etc
keyposition	Bar code position
selectionkey	65000
platekey	Barcode
wells	Wells ranges
minThersholdForCVCal	Thresolld for data outliears in CV
minThersholdForCV	Thresold of values in CV not to remove
yConcentration	Concentrations of y drug
xConcentration	Concentrations of x drug

Value

Matrix of replicated survival values

Author(s)

Muhammad kashif

Examples

fl <- system.file("extdata","FluoOptima_384_2014-03-28test.txt", package="COMBIA")
wls <- list(c("A11:H11", "A12:H12","A1:H10",   "I11:P11", "I12:P12","I1:P10", 
        "A23:H23", "A24:H24","A13:H22",   "I23:P23", "I24:P24","I13:P22")
                        )
pltype <- "384"
keypos <- 2     
seleckey <- "65000"
barCode <- 7049
minThersholdForCVCal <- 0.1 
minThersholdForCV <- 0.3
xConc <- c(0.00,  0.20,  0.39,0.78,  1.56,  3.12,  6.25, 12.50, 25.00, 50.00) 
yConc <- c(128,  64,  32,  16,   8,   4,   2,   0)
readFMCAValues(fl, pltype, keypos, seleckey, barCode,
              wls, minThersholdForCVCal, minThersholdForCV, xConc, yConc   )

COMBIA documentation built on May 2, 2019, 7:23 a.m.