DCluster: Functions for the Detection of Spatial Clusters of Diseases

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A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics.

Author
Virgilio Gmez-Rubio, Juan Ferrndiz-Ferragud and Antonio Lpez-Qulez, with contributions by Roger Bivand.
Date of publication
2015-03-17 17:58:56
Maintainer
Virgilio Gmez-Rubio <Virgilio.Gomez@uclm.es>
License
GPL (>= 2)
Version
0.2-7

View on CRAN

Man pages

achisq
Another Implementation of Pearson's Chi-square Statistic
achisq.boot
Bootstrap Replicates of Pearson's Chi-square Statistic
achisq.stat
Another Implementation of Pearson's Chi-square Statistic
besagnewell
Besag and Newell's Statistic for Spatial Clustering
besagnewell.boot
Generate Boostrap Replicates of Besag and Newell's Statistic
besagnewell.stat
Besag and Newell's Statistic for Spatial Clustering
bn.iscluster
Clustering Function for Besag and Newell's Method
calculate.mle
Calculate Parameters Involved in Sampling Procedures
DCluster
A Package for the Detection of Spatial Clusters of Diseases...
dcluster.test
Class for Results from a Test for the Detection of Disease...
dean_test
Likelihood Ratio Test and Dean's Tests for Overdispertion
empbaysmooth
Empirical Bayes Smoothing
gearyc
Geary's C Autocorrelation Statistic
gearyc.boot
Generate Bootstrap Replicates of Geary's C Autocorrelation...
gearyc.stat
Compute Geary's C Autocorrelation Statistic
get.knclusters
Get Areas in a Cluster Detected with Kulldorff's Statistic
kn.iscluster
Clustering Function for Kulldorff and Nagarwalla's Statistic
kullnagar
Kulldorff and Nagarwalla's Statistic for Spatial Clustering.
kullnagar.boot
Generate Bootstrap Replicates of Kulldorff and Nagarwalla's...
kullnagar.stat
Kulldorff and Nagarwalla's Statistic for Spatial Clustering.
lognormalEB
Empirical Bayes Smoothing Using a log-Normal Model
moranI
Moran's I Autocorrelation Statistic
moranI.boot
Generate Bootstrap Replicates of Moran's I Autocorrelation...
moranI.stat
Compute Moran's I Autocorrelation Statistic
observed.sim
Randomly Generate Observed Cases from Different Statistical...
opgam
Openshaw's GAM
opgam.iscluster.default
Local Clustering Test Function
pkg-internal
Internal Functions in the DCluster Package.
pottwhitt
Potthoff-Whittinghill's Statistic for Overdispersion
pottwhitt.boot
Bootstrap Replicates of Potthoff-Whittinghill's Statistic
pottwhitt.stat
Compute Potthoff-Whittinghill's Statistic
rmultin
Generate Random Observations from a Multinomial Distribution
stone
Stone's Test
stone.boot
Generate Boostrap Replicates of Stone's Statistic
stone.stat
Compute Stone's Statistic
tango
Tango's Statistic for General Clustering
tango.boot
Generate Bootstrap Replicated of Tango's Statistic
tango.stat
Compute Tango's Statistic for General Clustering
whittermore
Whittermore's Statistic
whittermore.boot
Generate Bootstrap Replicates of Whittermore's Statistic
whittermore.stat
Compute Whittermore's Statistic

Files in this package

DCluster
DCluster/inst
DCluster/inst/CITATION
DCluster/src
DCluster/src/GAM.c
DCluster/src/kullnagar.c
DCluster/src/mycumsum.c
DCluster/src/DCluster.h
DCluster/NAMESPACE
DCluster/R
DCluster/R/achisq.pboot.R
DCluster/R/get.knclusters.R
DCluster/R/dcluster.test.R
DCluster/R/gearyc.pboot.R
DCluster/R/achisq.boot.R
DCluster/R/pottwhitt.stat.R
DCluster/R/moranI.stat.R
DCluster/R/dean_test.R
DCluster/R/gearyc.boot.R
DCluster/R/negbin.sim.R
DCluster/R/gearyc.stat.R
DCluster/R/lognormalEB.R
DCluster/R/tango.pboot.R
DCluster/R/moranI.pboot.R
DCluster/R/kullnagar.pboot.R
DCluster/R/rmultin.R
DCluster/R/tango.boot.R
DCluster/R/besagnewell.pboot.R
DCluster/R/besagnewell.boot.R
DCluster/R/poisson.sim.R
DCluster/R/pottwhitt.boot.R
DCluster/R/stone.boot.R
DCluster/R/achisq.stat.R
DCluster/R/multinom.sim.R
DCluster/R/tango.stat.R
DCluster/R/whittermore.boot.R
DCluster/R/kullnagar.boot.R
DCluster/R/calculate.mle.R
DCluster/R/kn.gumbel.iscluster.R
DCluster/R/moranI.boot.R
DCluster/R/opgam.R
DCluster/R/whittermore.pboot.R
DCluster/R/empbaysmooth.R
DCluster/R/kullnagar.stat.R
DCluster/R/stone.stat.R
DCluster/R/stone.pboot.R
DCluster/R/whittermore.stat.R
DCluster/R/besagnewell.stat.R
DCluster/R/pottwhitt.pboot.R
DCluster/MD5
DCluster/DESCRIPTION
DCluster/man
DCluster/man/stone.stat.Rd
DCluster/man/gearyc.stat.Rd
DCluster/man/kullnagar.stat.Rd
DCluster/man/lognormalEB.Rd
DCluster/man/stone.Rd
DCluster/man/tango.stat.Rd
DCluster/man/besagnewell.boot.Rd
DCluster/man/moranI.Rd
DCluster/man/gearyc.Rd
DCluster/man/whittermore.boot.Rd
DCluster/man/whittermore.stat.Rd
DCluster/man/dean_test.Rd
DCluster/man/moranI.boot.Rd
DCluster/man/achisq.Rd
DCluster/man/rmultin.Rd
DCluster/man/opgam.Rd
DCluster/man/gearyc.boot.Rd
DCluster/man/besagnewell.stat.Rd
DCluster/man/stone.boot.Rd
DCluster/man/achisq.boot.Rd
DCluster/man/pottwhitt.stat.Rd
DCluster/man/besagnewell.Rd
DCluster/man/tango.boot.Rd
DCluster/man/pkg-internal.Rd
DCluster/man/empbaysmooth.Rd
DCluster/man/tango.Rd
DCluster/man/opgam.iscluster.default.Rd
DCluster/man/DCluster.Rd
DCluster/man/whittermore.Rd
DCluster/man/pottwhitt.Rd
DCluster/man/kullnagar.boot.Rd
DCluster/man/pottwhitt.boot.Rd
DCluster/man/moranI.stat.Rd
DCluster/man/dcluster.test.Rd
DCluster/man/calculate.mle.Rd
DCluster/man/observed.sim.Rd
DCluster/man/bn.iscluster.Rd
DCluster/man/kullnagar.Rd
DCluster/man/get.knclusters.Rd
DCluster/man/kn.iscluster.Rd
DCluster/man/achisq.stat.Rd