DCluster: Functions for the Detection of Spatial Clusters of Diseases
Version 0.2-7

A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics.

AuthorVirgilio Gmez-Rubio, Juan Ferrndiz-Ferragud and Antonio Lpez-Qulez, with contributions by Roger Bivand.
Date of publication2015-03-17 17:58:56
MaintainerVirgilio Gmez-Rubio <Virgilio.Gomez@uclm.es>
LicenseGPL (>= 2)
Version0.2-7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DCluster")

Popular man pages

achisq: Another Implementation of Pearson's Chi-square Statistic
achisq.boot: Bootstrap Replicates of Pearson's Chi-square Statistic
besagnewell.stat: Besag and Newell's Statistic for Spatial Clustering
dean_test: Likelihood Ratio Test and Dean's Tests for Overdispertion
gearyc.stat: Compute Geary's C Autocorrelation Statistic
observed.sim: Randomly Generate Observed Cases from Different Statistical...
opgam.iscluster.default: Local Clustering Test Function
See all...

All man pages Function index File listing

Man pages

achisq: Another Implementation of Pearson's Chi-square Statistic
achisq.boot: Bootstrap Replicates of Pearson's Chi-square Statistic
achisq.stat: Another Implementation of Pearson's Chi-square Statistic
besagnewell: Besag and Newell's Statistic for Spatial Clustering
besagnewell.boot: Generate Boostrap Replicates of Besag and Newell's Statistic
besagnewell.stat: Besag and Newell's Statistic for Spatial Clustering
bn.iscluster: Clustering Function for Besag and Newell's Method
calculate.mle: Calculate Parameters Involved in Sampling Procedures
DCluster: A Package for the Detection of Spatial Clusters of Diseases...
dcluster.test: Class for Results from a Test for the Detection of Disease...
dean_test: Likelihood Ratio Test and Dean's Tests for Overdispertion
empbaysmooth: Empirical Bayes Smoothing
gearyc: Geary's C Autocorrelation Statistic
gearyc.boot: Generate Bootstrap Replicates of Geary's C Autocorrelation...
gearyc.stat: Compute Geary's C Autocorrelation Statistic
get.knclusters: Get Areas in a Cluster Detected with Kulldorff's Statistic
kn.iscluster: Clustering Function for Kulldorff and Nagarwalla's Statistic
kullnagar: Kulldorff and Nagarwalla's Statistic for Spatial Clustering.
kullnagar.boot: Generate Bootstrap Replicates of Kulldorff and Nagarwalla's...
kullnagar.stat: Kulldorff and Nagarwalla's Statistic for Spatial Clustering.
lognormalEB: Empirical Bayes Smoothing Using a log-Normal Model
moranI: Moran's I Autocorrelation Statistic
moranI.boot: Generate Bootstrap Replicates of Moran's I Autocorrelation...
moranI.stat: Compute Moran's I Autocorrelation Statistic
observed.sim: Randomly Generate Observed Cases from Different Statistical...
opgam: Openshaw's GAM
opgam.iscluster.default: Local Clustering Test Function
pkg-internal: Internal Functions in the DCluster Package.
pottwhitt: Potthoff-Whittinghill's Statistic for Overdispersion
pottwhitt.boot: Bootstrap Replicates of Potthoff-Whittinghill's Statistic
pottwhitt.stat: Compute Potthoff-Whittinghill's Statistic
rmultin: Generate Random Observations from a Multinomial Distribution
stone: Stone's Test
stone.boot: Generate Boostrap Replicates of Stone's Statistic
stone.stat: Compute Stone's Statistic
tango: Tango's Statistic for General Clustering
tango.boot: Generate Bootstrap Replicated of Tango's Statistic
tango.stat: Compute Tango's Statistic for General Clustering
whittermore: Whittermore's Statistic
whittermore.boot: Generate Bootstrap Replicates of Whittermore's Statistic
whittermore.stat: Compute Whittermore's Statistic

Functions

DCluster Man page
DeanB Man page Source code
DeanB2 Man page Source code
achisq Man page
achisq.boot Man page Source code
achisq.pboot Man page Source code
achisq.stat Man page Source code
achisq.test Man page Source code
besagnewell Man page
besagnewell.boot Man page Source code
besagnewell.pboot Man page Source code
besagnewell.stat Man page Source code
bn.iscluster Man page Source code
calculate.mle Man page Source code
dotest Man page Source code
empbaysmooth Man page Source code
gearyc Man page
gearyc.boot Man page Source code
gearyc.pboot Man page Source code
gearyc.stat Man page Source code
gearyc.test Man page Source code
get.knclusters Man page Source code
kn.gumbel.iscluster Man page Source code
kn.iscluster Man page Source code
kullnagar Man page
kullnagar.boot Man page Source code
kullnagar.pboot Man page Source code
kullnagar.stat Man page Source code
kullnagar.stat.bern Man page Source code
kullnagar.stat.poisson Man page Source code
lognormalEB Man page Source code
moranI Man page
moranI.boot Man page Source code
moranI.pboot Man page Source code
moranI.stat Man page Source code
moranI.test Man page Source code
multinom.sim Man page Source code
negbin.sim Man page Source code
opgam Man page Source code
opgam.intern Man page Source code
opgam.iscluster.default Man page Source code
opgam.iscluster.negbin Man page Source code
plot.dcluster Man page Source code
poisson.sim Man page Source code
pottwhitt Man page
pottwhitt.boot Man page Source code
pottwhitt.pboot Man page Source code
pottwhitt.stat Man page Source code
pottwhitt.test Man page Source code
print.dcluster Man page Source code
rmultin Man page Source code
stone Man page
stone.boot Man page Source code
stone.pboot Man page Source code
stone.stat Man page Source code
stone.test Man page Source code
summary.dcluster Man page Source code
tango Man page
tango.boot Man page Source code
tango.pboot Man page Source code
tango.stat Man page Source code
tango.test Man page Source code
test.nb.pois Man page Source code
whittermore Man page
whittermore.boot Man page Source code
whittermore.pboot Man page Source code
whittermore.stat Man page Source code
whittermore.test Man page Source code

Files

inst
inst/CITATION
src
src/GAM.c
src/kullnagar.c
src/mycumsum.c
src/DCluster.h
NAMESPACE
R
R/achisq.pboot.R
R/get.knclusters.R
R/dcluster.test.R
R/gearyc.pboot.R
R/achisq.boot.R
R/pottwhitt.stat.R
R/moranI.stat.R
R/dean_test.R
R/gearyc.boot.R
R/negbin.sim.R
R/gearyc.stat.R
R/lognormalEB.R
R/tango.pboot.R
R/moranI.pboot.R
R/kullnagar.pboot.R
R/rmultin.R
R/tango.boot.R
R/besagnewell.pboot.R
R/besagnewell.boot.R
R/poisson.sim.R
R/pottwhitt.boot.R
R/stone.boot.R
R/achisq.stat.R
R/multinom.sim.R
R/tango.stat.R
R/whittermore.boot.R
R/kullnagar.boot.R
R/calculate.mle.R
R/kn.gumbel.iscluster.R
R/moranI.boot.R
R/opgam.R
R/whittermore.pboot.R
R/empbaysmooth.R
R/kullnagar.stat.R
R/stone.stat.R
R/stone.pboot.R
R/whittermore.stat.R
R/besagnewell.stat.R
R/pottwhitt.pboot.R
MD5
DESCRIPTION
man
man/stone.stat.Rd
man/gearyc.stat.Rd
man/kullnagar.stat.Rd
man/lognormalEB.Rd
man/stone.Rd
man/tango.stat.Rd
man/besagnewell.boot.Rd
man/moranI.Rd
man/gearyc.Rd
man/whittermore.boot.Rd
man/whittermore.stat.Rd
man/dean_test.Rd
man/moranI.boot.Rd
man/achisq.Rd
man/rmultin.Rd
man/opgam.Rd
man/gearyc.boot.Rd
man/besagnewell.stat.Rd
man/stone.boot.Rd
man/achisq.boot.Rd
man/pottwhitt.stat.Rd
man/besagnewell.Rd
man/tango.boot.Rd
man/pkg-internal.Rd
man/empbaysmooth.Rd
man/tango.Rd
man/opgam.iscluster.default.Rd
man/DCluster.Rd
man/whittermore.Rd
man/pottwhitt.Rd
man/kullnagar.boot.Rd
man/pottwhitt.boot.Rd
man/moranI.stat.Rd
man/dcluster.test.Rd
man/calculate.mle.Rd
man/observed.sim.Rd
man/bn.iscluster.Rd
man/kullnagar.Rd
man/get.knclusters.Rd
man/kn.iscluster.Rd
man/achisq.stat.Rd
DCluster documentation built on May 20, 2017, 12:56 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

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