|Tests for Overdispertion||R Documentation|
When working with count data, the assumption of a Poisson model is common. However, sometimes the variance of the data is significantly higher that their mean which means that the assumption of that data have been drawn from a Poisson distribution is wrong.
In that case is is usually said that data are overdispersed and a better
model must be proposed. A good choice is a Negative Binomial distribution
(see, for example,
Tests for overdispersion available in this package are the Likelihood Ratio Test (LRT) and Dean's P_B and P'_B tests.
test.nb.pois(x.nb, x.glm) DeanB(x.glm, alternative="greater") DeanB2(x.glm, alternative="greater")
Fitted Negative Binomial.
Fitted Poisson model.
Alternative hipothesis to be tested. It can be "less", "greater" or "two.sided", although the usual choice will often be "greater".
The LRT is computed to compare a fitted Poisson model against a fitted Negative Binomial model.
Dean's P_B and P'_B tests are score tests. These two tests were proposed for the case in which we look for overdispersion of the form var(Y_i)=μ_i(1+τ μ_i), where E(Y_i)=μ_i. See Dean (1992) for more details.
An object of type htest with the results (p-value, etc.).
Dean, C.B. (1992), Testing for overdispersion in Poisson and binomial regression models, J. Amer. Statist. Assoc. 87, 451-457.
DCluster, achisq.stat, pottwhit.stat, negative.binomial (MASS), glm.nb (MASS)
library(spdep) library(MASS) data(nc.sids) sids<-data.frame(Observed=nc.sids$SID74) sids<-cbind(sids, Expected=nc.sids$BIR74*sum(nc.sids$SID74)/sum(nc.sids$BIR74)) sids<-cbind(sids, x=nc.sids$x, y=nc.sids$y) x.glm<-glm(Observed~1+offset(log(sids$Expected)), data=sids, family=poisson()) x.nb<-glm.nb(Observed~1+offset(log(Expected)), data=sids) print(test.nb.pois(x.nb, x.glm)) print(DeanB(x.glm)) print(DeanB2(x.glm))
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