API for DIscBIO
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
| Global functions | |
|---|---|
| ACC | Source code |
| ClassVectoringDT | Man page |
| ClassVectoringDT,DISCBIO-method | Man page |
| ClustDiffGenes | Man page |
| ClustDiffGenes,DISCBIO-method | Man page |
| Clustexp | Man page |
| Clustexp,DISCBIO-method | Man page |
| DEGanalysis | Man page |
| DEGanalysis,DISCBIO-method | Man page |
| DEGanalysis2clust | Man page |
| DEGanalysis2clust,DISCBIO-method | Man page |
| DISCBIO | Man page |
| DISCBIO-class | Man page |
| DISCBIO-class, | Man page |
| DISCBIO2SingleCellExperiment | Man page Source code |
| Exprmclust | Man page |
| Exprmclust,DISCBIO-method | Man page |
| Exprmclust,data.frame-method | Man page |
| FinalPreprocessing | Man page |
| FinalPreprocessing,DISCBIO-method | Man page |
| FindOutliers | Man page |
| FindOutliers,DISCBIO-method | Man page |
| HumanMouseGeneIds | Man page |
| J48DT | Man page Source code |
| J48DTeval | Man page Source code |
| JS | Source code |
| Jaccard | Man page Source code |
| KmeanOrder | Man page |
| KmeanOrder,DISCBIO-method | Man page |
| KmeansCBI | Source code |
| Kmeansruns | Source code |
| MCC | Source code |
| NetAnalysis | Man page Source code |
| Networking | Man page Source code |
| NoiseFiltering | Man page |
| NoiseFiltering,DISCBIO-method | Man page |
| Normalizedata | Man page |
| Normalizedata,DISCBIO-method | Man page |
| PCAplotSymbols | Man page |
| PCAplotSymbols,DISCBIO-method | Man page |
| PPI | Man page Source code |
| PlotMBpca | Man page Source code |
| PlotmclustMB | Man page |
| PlotmclustMB,DISCBIO-method | Man page |
| RpartDT | Man page Source code |
| RpartEVAL | Man page Source code |
| SN | Source code |
| SP | Source code |
| VolcanoPlot | Man page Source code |
| add_legend | Source code |
| as.DISCBIO | Man page Source code |
| binompval | Source code |
| bootstrap | Source code |
| calc_pcareduceres | Source code |
| check.format | Man page Source code |
| clustfun | Source code |
| clustheatmap | Man page |
| clustheatmap,DISCBIO-method | Man page |
| comptSNE | Man page |
| comptSNE,DISCBIO-method | Man page |
| compute.block.perms | Source code |
| cox.func | Source code |
| cox.seq.func | Source code |
| cross.val | Source code |
| customConvertFeats | Man page Source code |
| detec.slab | Source code |
| dist.gen | Source code |
| downsample | Source code |
| est.s0 | Source code |
| eval.pred | Source code |
| foldchange.paired | Source code |
| foldchange.seq.twoclass.paired | Source code |
| foldchange.seq.twoclass.unpaired | Man page Source code Source code |
| foldchange.twoclass | Source code |
| generate.dels | Source code |
| getperms | Source code |
| insert.value | Source code |
| integer.base.b | Source code |
| localfdr | Source code |
| multiclass.func | Source code |
| multiclass.seq.func | Source code |
| mysvd | Source code |
| onesample.ttest.func | Source code |
| paired.ttest.func | Source code |
| parse.block.labels.for.2classes | Source code |
| parse.time.labels.and.summarize.data | Source code |
| patterndiscovery.func | Source code |
| permute | Source code |
| permute.rows | Source code |
| plotExptSNE | Man page |
| plotExptSNE,DISCBIO-method | Man page |
| plotGap | Man page |
| plotGap,DISCBIO-method | Man page |
| plotLabelstSNE | Man page |
| plotLabelstSNE,DISCBIO-method | Man page |
| plotOrderTsne | Man page |
| plotOrderTsne,DISCBIO-method | Man page |
| plotSilhouette | Man page |
| plotSilhouette,DISCBIO-method | Man page |
| plotSymbolstSNE | Man page |
| plotSymbolstSNE,DISCBIO-method | Man page |
| plottSNE | Man page |
| plottSNE,DISCBIO-method | Man page |
| predictlocalfdr | Source code |
| prepExampleDataset | Man page Source code |
| pseudoTimeOrdering | Man page |
| pseudoTimeOrdering,DISCBIO-method | Man page |
| quantitative.func | Source code |
| quantitative.seq.func | Source code |
| qvalue.func | Source code |
| rankcols | Man page Source code |
| reformatSiggenes | Man page Source code |
| replaceDecimals | Man page Source code |
| resa | Man page Source code |
| retrieveURL | Man page Source code |
| sammy | Man page Source code |
| sample.perms | Source code |
| samr.compute.delta.table | Source code |
| samr.compute.delta.table.array | Source code |
| samr.compute.delta.table.seq | Source code |
| samr.compute.siggenes.table | Source code |
| samr.estimate.depth | Man page Source code |
| samr.plot | Source code |
| samr.seq.detec.slabs | Source code |
| samr.seq.null.err | Source code |
| sumlengths | Source code |
| timearea.func | Source code |
| ttest.func | Source code |
| valuesG1msTest | Man page |
| varr | Source code |
| wilcoxon.func | Source code |
| wilcoxon.paired.seq.func | Source code |
| wilcoxon.unpaired.seq.func | Man page Source code |
