FinalPreprocessing: Final Preprocessing

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Final Preprocessing

Description

This function generates the final filtered normalized dataset.

Usage

FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

## S4 method for signature 'DISCBIO'
FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

Arguments

object	DISCBIO class object.
GeneFlitering	GeneFlitering has to be one of the followings: ["NoiseF","ExpF"]. Default is "NoiseF"
export	A logical vector that allows writing the final gene list in excel file. Default is TRUE.
quiet	if 'TRUE', intermediary output is suppressed
fileName	File name for exporting (if 'export = TRUE')

Value

The DISCBIO-class object input with the FinalGeneList slot filled.

Examples

#sc <- DISCBIO(valuesG1msTest)
#sc <- NoiseFiltering(sc, percentile = 0.9, CV = 0.2, export = FALSE)
#sc <- FinalPreprocessing(sc, GeneFlitering = "NoiseF", export = FALSE)

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.