PPI: Defining protein-protein interactions (PPI) over a list of...
In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
PPI R Documentation
Defining protein-protein interactions (PPI) over a list of genes,
Description
This function uses STRING-api. The outcome of STRING analysis
will be stored in comma-separated values files.
Usage
PPI(data, FileName = NULL, species = "9606")
Arguments
data
A gene list.
FileName
A string vector showing the name to be used to save the
resulted table. If null, no file will be exported
species
The taxonomy name/id. Default is "9606" for Homo sapiens.
Value
Either CSV files stored in the user's file system and its
corresponding 'data.frame' object in R or and R object containing that
information.
DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.
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| PPI | R Documentation |
Defining protein-protein interactions (PPI) over a list of genes,
Description
This function uses STRING-api. The outcome of STRING analysis will be stored in comma-separated values files.
Usage
PPI(data, FileName = NULL, species = "9606")
Arguments
data |
A gene list. |
FileName |
A string vector showing the name to be used to save the resulted table. If null, no file will be exported |
species |
The taxonomy name/id. Default is "9606" for Homo sapiens. |
Value
Either CSV files stored in the user's file system and its corresponding 'data.frame' object in R or and R object containing that information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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