VolcanoPlot: Volcano Plot

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Volcano Plot

Description

Plotting differentially expressed genes (DEGs) in a particular cluster. Volcano plots are used to readily show the DEGs by plotting significance versus fold-change on the y and x axes, respectively.

Usage

VolcanoPlot(object, value = 0.05, name = NULL, fc = 0.5, FS = 0.4)

Arguments

object	A data frame showing the differentially expressed genes (DEGs) in a particular cluster
value	A numeric value of the false discovery rate. Default is 0.05.. Default is 0.05
name	A string vector showing the name to be used on the plot title
fc	A numeric value of the fold change. Default is 0.5.
FS	A numeric value of the font size. Default is 0.4.

Value

A volcano plot

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.