plotExptSNE: Highlighting gene expression in the t-SNE map

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Highlighting gene expression in the t-SNE map

Description

The t-SNE map representation can also be used to analyze expression of a gene or a group of genes, to investigate cluster specific gene expression patterns

Usage

plotExptSNE(object, g, n = NULL)

## S4 method for signature 'DISCBIO'
plotExptSNE(object, g, n = NULL)

Arguments

object	DISCBIO class object.
g	Individual gene name or vector with a group of gene names corresponding to a subset of valid row names of the ndata slot of the DISCBIO object.
n	String of characters representing the title of the plot. Default is NULL and the first element of g is chosen.

Value

t-SNE plot for one particular gene

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.