KmeanOrder: Pseudo-time ordering based on k-means clusters

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Pseudo-time ordering based on k-means clusters

Description

This function takes the exact output of exprmclust function and construct Pseudo-time ordering by mapping all cells onto the path that connects cluster centers.

Usage

KmeanOrder(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"
)

## S4 method for signature 'DISCBIO'
KmeanOrder(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"
)

Arguments

object	DISCBIO class object.
quiet	if 'TRUE', suppresses intermediary output
export	if 'TRUE', exports order table to csv
filename	Name of the exported file (if 'export=TRUE')

Value

The DISCBIO-class object input with the kordering slot filled.

Note

This function has been replaced by pseudoTimeOrdering(), but it is being kept for legacy purposes. It will, however, be removed from future versions of DIscBIO.

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.