pseudoTimeOrdering: Pseudo-time ordering

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Pseudo-time ordering

Description

This function takes the exact output of exprmclust function and construct Pseudo-time ordering by mapping all cells onto the path that connects cluster centers.

Usage

pseudoTimeOrdering(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering"
)

## S4 method for signature 'DISCBIO'
pseudoTimeOrdering(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering"
)

Arguments

object	DISCBIO class object.
quiet	if 'TRUE', suppresses intermediary output
export	if 'TRUE', exports order table to csv
filename	Name of the exported file (if 'export=TRUE')

Value

The DISCBIO-class object input with the kordering slot filled.

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.