PlotMBpca: Plotting pseudo-time ordering or gene expression in...

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Plotting pseudo-time ordering or gene expression in Model-based clustering in PCA

Description

The PCA representation can either be used to show pseudo-time ordering or the gene expression of a particular gene.

Usage

PlotMBpca(object, type = "order", g = NULL, n = NULL)

Arguments

object	DISCBIO class object.
type	either 'order' to plot pseudo-time ordering or 'exp' to plot gene expression
g	Individual gene name or vector with a group of gene names corresponding to a subset of valid row names of the ndata slot of the DISCBIO object. Ignored if 'type="order"'.
n	String of characters representing the title of the plot. Default is NULL and the first element of g is chosen. Ignored if 'type="order"'.

Value

A plot of the PCA.

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.