Networking: Plotting the network.

In DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Plotting the network.

Description

This function uses STRING API to plot the network.

Usage

Networking(
  data,
  FileName = NULL,
  species = "9606",
  plot_width = 25,
  plot_height = 15,
  retries = 3
)

Arguments

data	A gene list.
FileName	A string vector showing the name to be used to save the resulted network. If 'NULL', the network will be saved to a temporary directory
species	The taxonomy name/id. Default is "9606" for Homo sapiens.
plot_width	Plot width
plot_height	Plot height
retries	maximum number of attempts to connect to the STRING api.

Value

A plot of the network

References

https://string-db.org/api/

DIscBIO documentation built on Nov. 6, 2023, 5:08 p.m.