inst/scripts/config.R

In DeLorean: Estimates Pseudotimes for Single Cell Expression Data

options(
  #
  # McDavid
  McDavid.model = 'exact',
  McDavid.method = 'vb',
  McDavid.max.cells = 10,
  McDavid.save.output = FALSE,
  #
  # Windram
  # Windram.model = 'exact',
  # Windram.model = 'exact-sizes',
  # Windram.model = 'lowrank-sizes',
  # Windram.method = 'vb',
  # Windram.method = 'sample',
  # Windram.max.genes = 25,
  # Windram.max.cells = 10,
  # Windram.save.output = FALSE,
  #
  # Shalek
  # Shalek.model = 'lowrank',
  Shalek.method = 'vb',
  # Shalek.max.genes = 33,
  # Shalek.max.cells = 77,
  Shalek.save.output = FALSE)