Files in EpiEstim
Estimate Time Varying Reproduction Numbers from Epidemic Curves
MD5
NEWS.md
NAMESPACE
DESCRIPTION
README.md
tests/testthat.R
tests/figs/flu2009-instantaneous-no-legend.svg
tests/figs/flu2009-si.svg
tests/figs/flu2009-incidence-import.svg
tests/figs/flu2009-rc.svg
tests/figs/deps.txt
tests/figs/flu2009-ri.svg
tests/expected_output/Example4.rda
tests/expected_output/Example1.rda
tests/expected_output/Example3.rda
tests/expected_output/Example2.rda
tests/testthat/test-stample_posterior_R.R
tests/testthat/test-estimate_R.R
tests/testthat/test-plot.R
R/plot.R
R/init_mcmc_params.R
R/make_config.R
R/estimate_R_plots.R
R/compatibility.R
R/wallinga_teunis.R
R/make_mcmc_control.R
R/discr_si.R
R/utilities.R
R/estimate_r.R
R/overall_infectivity.R
R/coarse2estim.R
R/data.R
R/sample_posterior_R.R
R/check_cdt_samples_convergence.R
man/Flu1918.Rd
man/WT.Rd
man/Flu2009.Rd
man/sample_posterior_R.Rd
man/make_mcmc_control.Rd
man/make_config.Rd
man/coarse2estim.Rd
man/mers_2014_15.Rd
man/OverallInfectivity.Rd
man/overall_infectivity.Rd
man/estimate_R.Rd
man/DiscrSI.Rd
man/Measles1861.Rd
man/MockRotavirus.Rd
man/plot.estimate_R.Rd
man/SARS2003.Rd
man/Smallpox1972.Rd
man/flu_2009_NYC_school.Rd
man/init_mcmc_params.Rd
man/wallinga_teunis.Rd
man/discr_si.Rd
man/estimate_R_plots.Rd
man/EstimateR.Rd
man/check_cdt_samples_convergence.Rd
inst/doc/demo.R
inst/doc/demo.Rmd
inst/doc/demo.html
data/flu_2009_NYC_school.rda
data/SARS2003.rda
data/Smallpox1972.rda
data/mers_2014_15.rda
data/Flu2009.rda
data/MockRotavirus.rda
data/Flu1918.rda
data/Measles1861.rda
build/vignette.rds
vignettes/demo.Rmd
