combineSampleTileMatrix: 'combineSampleTileMatrix'
In MOCHA: Modeling for Single-Cell Open Chromatin Analysis
View source: R/combineSampleTileMatrix.R
combineSampleTileMatrix R Documentation
combineSampleTileMatrix
Description
combineSampleTileMatrix combines all celltypes in a
SampleTileMatrix object into a SummarizedExperiment with one single matrix
across all cell types and samples,
Usage
combineSampleTileMatrix(SampleTileObj, NAtoZero = TRUE, verbose = FALSE)
Arguments
SampleTileObj
The SummarizedExperiment object output from
getSampleTileMatrix containing your sample-tile matrices
NAtoZero
Set NA values in the sample-tile matrix to zero
verbose
Set TRUE to display additional messages. Default is FALSE.
Value
TileCorr A data.table correlation matrix
MOCHA documentation built on May 29, 2024, 2:25 a.m.
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View source: R/combineSampleTileMatrix.R
| combineSampleTileMatrix | R Documentation |
combineSampleTileMatrix
Description
combineSampleTileMatrix combines all celltypes in a
SampleTileMatrix object into a SummarizedExperiment with one single matrix
across all cell types and samples,
Usage
combineSampleTileMatrix(SampleTileObj, NAtoZero = TRUE, verbose = FALSE)
Arguments
SampleTileObj |
The SummarizedExperiment object output from getSampleTileMatrix containing your sample-tile matrices |
NAtoZero |
Set NA values in the sample-tile matrix to zero |
verbose |
Set TRUE to display additional messages. Default is FALSE. |
Value
TileCorr A data.table correlation matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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