View source: R/heuristicAnalysis.R
getIntensityThreshold | R Documentation |
getIntensityThreshold
getIntensityThreshold
takes the output of peak calling with
callOpenTiles and creates sample-tile matrices containing the signal
intensity at each tile.
getIntensityThreshold(
TSAM,
cellPopulations = "all",
type = "mean",
returnPlots = TRUE,
verbose = FALSE
)
TSAM |
a SummarizedExperiment object generated by MOCHA |
cellPopulations |
vector of strings. Cell subsets found in the TSAM, or the word 'All' if all should be used. |
type |
string. Describes the type of metric to be used. Options include median or mean. |
returnPlots |
Boolean. Default is TRUE and returns a plot of |
verbose |
Set TRUE to display additional messages. Default is FALSE. |
plot object
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