mergeTileResults: 'mergeTileResults'

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

mergeTileResults

Description

mergeTileResults merges a list of tileResults that each contain unique samples into a single object encompassing all samples. Only cell populations shared among all input tileResults will be retained. This function can merge MultiAssayExperiment objects from callOpenTiles that are created with the same TxDb, OrgDb, and Genome assembly.

Usage

mergeTileResults(tileResultsList, numCores = 1, verbose = TRUE)

Arguments

tileResultsList	List of MultiAssayExperiments objects returned by callOpenTiles containing containing peak calling results.
numCores	Optional, the number of cores to use with multiprocessing. Default is 1.
verbose	Set TRUE to display additional messages. Default is FALSE.

Value

tileResults a single MultiAssayExperiment containing a sample-tile intensity matrix for each sample and common cell population in the input tileResultsList.

Examples

## Not run: 
# Depends on local MOCHA tileResults
MOCHA::mergeTileResults(
  list(tileResultsCelltypesABC, tileResultsCelltypesBCD)
)

## End(Not run)

MOCHA documentation built on May 29, 2024, 2:25 a.m.