exportOpenTiles: 'exportOpenTiles'

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

exportOpenTiles

Description

exportOpenTiles exports the open tiles of a given cell population to bigBed file for visualization in genome browsers.

Usage

exportOpenTiles(SampleTileObject, cellPopulation, outDir, verbose = FALSE)

Arguments

SampleTileObject	The SummarizedExperiment object output from getSampleTileMatrix
cellPopulation	The name of the cell population to export
outDir	Desired output directory where bigBed files will be saved
verbose	Set TRUE to display additional messages. Default is FALSE.

Value

outList A List of output filepaths

Examples

## Not run: 
MOCHA::exportOpenTiles(
  SampleTileObject = SampleTileObject,
  cellPopulation,
  outDir = tempdir(),
  verbose = TRUE
)

## End(Not run)

MOCHA documentation built on May 29, 2024, 2:25 a.m.