exportDifferentials: 'exportDifferentials'

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

exportDifferentials

Description

exportDifferentials exports the differential peaks output GRangesList output from getDifferentialAccessibleTiles to bigBed format for visualization in genome browsers.

Usage

exportDifferentials(
  SampleTileObject,
  DifferentialsGRList,
  outDir,
  verbose = FALSE
)

Arguments

SampleTileObject	The SummarizedExperiment object output from getSampleTileMatrix
DifferentialsGRList	GRangesList output from getDifferentialAccessibleTiles
outDir	Desired output directory where bigBed files will be saved
verbose	Set TRUE to display additional messages. Default is FALSE.

Value

outList A List of output filepaths

Examples

## Not run: 
MOCHA::exportDifferentials(
  SampleTileObject = SampleTileMatrices,
  DifferentialsGRList,
  outDir = tempdir(),
  verbose = TRUE
)

## End(Not run)

MOCHA documentation built on May 29, 2024, 2:25 a.m.