packMOCHA: 'packMOCHA'

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

packMOCHA

Description

packMOCHA combines a MOCHA object (Sample-Tile Matrix or tileResults) with its saved coverage tracks into a single zip archive. This allows MOCHA objects and the necessary coverage files for plotting to be shared to other file systems. See also: unpackMOCHA

Usage

packMOCHA(MOCHAObj, zipfile, verbose = FALSE)

Arguments

MOCHAObj	A MultiAssayExperiment or RangedSummarizedExperiment, from MOCHA
zipfile	Filename and path of the zip archive.
verbose	Set TRUE to display additional messages. Default is FALSE.

Value

zipfile Path to zip archive.

Examples

## Not run: 
# Depends on and manipulates files on filesystem
myOutputDir <- "/home/documents/MOCHA_out"
zipPath <- MOCHA::packMOCHA(
  tileResults, zipfile = file.path(myOutputDir, "testzip.zip")
)

## End(Not run)

MOCHA documentation built on May 29, 2024, 2:25 a.m.