Man pages for MSIseq
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
| Compute.input.variables | Compute Mutation Counts from Tumor Exome Somatic Mutations |
| find.mono.repeats | Find Mono-nucleotide Repeats |
| MSIseq.classify | Classify Microsatellite Instability with MSIseq Classifier |
| MSIseq-package | Assess Tumor Microsatellite Instability with a Decision Tree... |
| MSIseq.train | Build Microsatellite Instability Classification Model with... |
| NGStestdata | Mutation Annotation Data with Test Set Samples |
| NGStestseqLen | Capture Sequence Length for Test Set Samples |
| NGStesttype | Cancer Types for the TCGA Test Set Samples |
| NGStrainclass | MSI Status Classification for the TCGA Training Set Samples |
| NGStraindata | Mutation Annotation Data with Training Set Samples |
| NGStrainseqLen | Capture Sequence Length for Training Set Samples |
| NGStraintype | Cancer Types for the TCGA Training Set Samples |
| read.fasta | Read Fasta File |
| test.mutationNum | Table of Mutation Numbers in Test Set Samples |
| train.mutationNum | Table of Mutation Numbers in Train Set Samples |
