calculate.bv: Calculate breeding values

In MoBPS: Modular Breeding Program Simulator

Description

Internal function to calculate the breeding value of a given individual

Usage

calculate.bv(
  population,
  gen,
  sex,
  nr,
  activ_bv,
  import.position.calculation = NULL,
  decodeOriginsU = decodeOriginsR,
  store.effect.freq = FALSE,
  bit.storing = FALSE,
  nbits = 30,
  output_compressed = FALSE,
  bv.ignore.traits = NULL
)

Arguments

population	Population list
gen	Generation of the individual of interest
sex	Sex of the individual of interest
nr	Number of the individual of interest
activ_bv	traits to consider
import.position.calculation	Function to calculate recombination point into adjacent/following SNP
decodeOriginsU	Used function for the decoding of genetic origins [[5]]/[[6]]
store.effect.freq	If TRUE store the allele frequency of effect markers per generation
bit.storing	Set to TRUE if the MoBPS (not-miraculix! bit-storing is used)
nbits	Bits available in MoBPS-bit-storing
output_compressed	Set to TRUE to get a miraculix-compressed genotype/haplotype
bv.ignore.traits	Vector of traits to ignore in the calculation of the genomic value (default: NULL; Only recommended for high number of traits and experienced users!)

Value

[[1]] true genomic value [[2]] allele frequency at QTL markers

Examples

data(ex_pop)
calculate.bv(ex_pop, gen=1, sex=1, nr=1, activ_bv = 1)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.