calculate.bv: Calculate breeding values

Description Usage Arguments Value

View source: R/calculate.bv.R

Description

Internal function to calculate the breeding value of a given individual

Usage

1
2
3
4
calculate.bv(population, gen, sex, nr, activ_bv,
  import.position.calculation = NULL, decodeOriginsU = decodeOriginsR,
  store.effect.freq = FALSE, bit.storing = FALSE, nbits = 30,
  output_compressed = FALSE)

Arguments

population

Population list

gen

Generation of the individual of interest

sex

Sex of the individual of interest

nr

Number of the individual of interest

activ_bv

traits to consider

import.position.calculation

Function to calculate recombination point into adjacent/following SNP

decodeOriginsU

Used function for the decoding of genetic origins [[5]]/[[6]]

store.effect.freq

If TRUE store the allele frequency of effect markers per generation

bit.storing

Set to TRUE if the RekomBre (not-miraculix! bit-storing is used)

nbits

Bits available in RekomBre-bit-storing

output_compressed

Set to TRUE to get a miraculix-compressed genotype/haplotype

Value

[[1]] true genomic value [[2]] allele frequency at QTL markers


MoBPS documentation built on March 31, 2020, 5:22 p.m.

Related to calculate.bv in MoBPS...