creating.phenotypic.transform: Create a phenotypic transformation

In MoBPS: Modular Breeding Program Simulator

Create a phenotypic transformation

Description

Function to perform create a transformation of phenotypes

Usage

creating.phenotypic.transform(
  population,
  phenotypic.transform.function = NULL,
  trait = 1,
  test.h2 = TRUE,
  gen = NULL,
  database = NULL,
  cohorts = NULL,
  h2 = seq(0.05, 0.5, by = 0.05),
  export.h2 = FALSE,
  n.sample = 1000
)

Arguments

population	Population list
phenotypic.transform.function	Phenotypic transformation to apply
trait	Trait for which a transformation is to be applied
test.h2	Set to FALSE to not perform heritability check
gen	Quick-insert for database (vector of all generations to export)
database	Groups of individuals to consider for the export
cohorts	Quick-insert for database (vector of names of cohorts to export)
h2	Vector of heritability input to test (before introducing noise from trafo; default: seq(0.05,0.5, by = 0.05))
export.h2	Set TRUE to export matrix of heritability before/after transformation
n.sample	Sample size to use in test.h2 (default: 1000)

Value

Population-list with a new phenotypic transformation function

Examples

data(ex_pop)
trafo <- function(x){return(x^2)}
population <- creating.phenotypic.transform(ex_pop, phenotypic.transform.function=trafo,
n.sample = 100)

MoBPS documentation built on Nov. 5, 2025, 6:26 p.m.